# refresh_hdf5_resources

Re-scan client roots and update available HDF5 resources.

Agent View of the PolicyLayer registry record for `refresh_hdf5_resources`. HTML page: https://policylayer.com/tools/io-github-iowarp-adios-mcp/refresh-hdf5-resources

## Facts

- Tool: `refresh_hdf5_resources`
- Server: CLIO Adios (`pypi:clio-kit`) — https://policylayer.com/tools/io-github-iowarp-adios-mcp.md
- Install: `npx -y pypi:clio-kit`
- Homepage: https://github.com/iowarp/clio-kit
- Risk category: Write (Medium risk)
- Registry record: grade F, identity unverified
- Server rate-limited: no
- Parameters: 0
- Recommended policy verdict: Rate-limited

## Example call (MCP tools/call, JSON-RPC 2.0)

```json
{
  "jsonrpc": "2.0",
  "id": 1,
  "method": "tools/call",
  "params": {
    "name": "refresh_hdf5_resources",
    "arguments": {}
  }
}
```

## Why refresh_hdf5_resources is rated Medium

This tool modifies the state of HDF5 resource metadata by rescanning and updating available resources. While it does not delete data (Destructive) or execute arbitrary code (Execute), it does perform a state-changing operation that alters what resources are available or visible in the system. The scope is limited to metadata/resource registration rather than data content, making it Write rather than more severe.

From the tool's own definition: "Tool description states it will 'Re-scan client roots and update available HDF5 resources.' The verb 'update' indicates modification of state, and 'refresh' implies synchronization that changes metadata or resource registrations."

## Use case

AI agents use refresh_hdf5_resources to create or update resources in CLIO Adios, usually the action step of a workflow, after the agent has gathered context. Every call changes real data in your CLIO Adios environment.

## Recommended policy (PolicyLayer)

Verdict: **Rate-limited**. Enforced by the PolicyLayer MCP gateway (https://policylayer.com/mcp-gateway) before a call reaches CLIO Adios:

```json
{
  "version": "1",
  "default": "deny",
  "tools": {
    "refresh_hdf5_resources": {
      "limits": [
        {
          "counter": "refresh_hdf5_resources_rate",
          "window": "minute",
          "max": 30,
          "scope": "grant"
        }
      ]
    }
  }
}
```

## Other tools on CLIO Adios (203)

- `cancel_slurm_job` — Destructive — https://policylayer.com/tools/io-github-iowarp-adios-mcp/cancel-slurm-job.md
- `destroy_pipeline` — Destructive — https://policylayer.com/tools/io-github-iowarp-adios-mcp/destroy-pipeline.md
- `jm_remove_repo` — Destructive — https://policylayer.com/tools/io-github-iowarp-adios-mcp/jm-remove-repo.md
- `jm_reset` — Destructive — https://policylayer.com/tools/io-github-iowarp-adios-mcp/jm-reset.md
- `remove_pkg` — Destructive — https://policylayer.com/tools/io-github-iowarp-adios-mcp/remove-pkg.md
- `slurm_cancel` — Destructive — https://policylayer.com/tools/io-github-iowarp-adios-mcp/slurm-cancel.md
- `allocate_slurm_nodes` — Execute — https://policylayer.com/tools/io-github-iowarp-adios-mcp/allocate-slurm-nodes.md
- `build_pipeline_env` — Execute — https://policylayer.com/tools/io-github-iowarp-adios-mcp/build-pipeline-env.md
- `generate_isosurface` — Execute — https://policylayer.com/tools/io-github-iowarp-adios-mcp/generate-isosurface.md
- `heatmap_plot` — Execute — https://policylayer.com/tools/io-github-iowarp-adios-mcp/heatmap-plot.md
- `hypothesis_testing` — Execute — https://policylayer.com/tools/io-github-iowarp-adios-mcp/hypothesis-testing.md
- `jarvis_run` — Execute — https://policylayer.com/tools/io-github-iowarp-adios-mcp/jarvis-run.md
- `jm_cd` — Execute — https://policylayer.com/tools/io-github-iowarp-adios-mcp/jm-cd.md
- `jm_graph_build` — Execute — https://policylayer.com/tools/io-github-iowarp-adios-mcp/jm-graph-build.md
- `module_load` — Execute — https://policylayer.com/tools/io-github-iowarp-adios-mcp/module-load.md
- `module_swap` — Execute — https://policylayer.com/tools/io-github-iowarp-adios-mcp/module-swap.md
- `module_unload` — Execute — https://policylayer.com/tools/io-github-iowarp-adios-mcp/module-unload.md
- `parallel_sort_large_file` — Execute — https://policylayer.com/tools/io-github-iowarp-adios-mcp/parallel-sort-large-file.md
- `reset_camera` — Execute — https://policylayer.com/tools/io-github-iowarp-adios-mcp/reset-camera.md
- `rotate_camera` — Execute — https://policylayer.com/tools/io-github-iowarp-adios-mcp/rotate-camera.md
- `run_pipeline` — Execute — https://policylayer.com/tools/io-github-iowarp-adios-mcp/run-pipeline.md
- `show_screenshot_preview` — Execute — https://policylayer.com/tools/io-github-iowarp-adios-mcp/show-screenshot-preview.md
- `stop_chronolog` — Execute — https://policylayer.com/tools/io-github-iowarp-adios-mcp/stop-chronolog.md
- `submit_array_job` — Execute — https://policylayer.com/tools/io-github-iowarp-adios-mcp/submit-array-job.md
- `submit_slurm_job` — Execute — https://policylayer.com/tools/io-github-iowarp-adios-mcp/submit-slurm-job.md
- `warp_by_vector` — Execute — https://policylayer.com/tools/io-github-iowarp-adios-mcp/warp-by-vector.md
- `aggregate_column_tool` — Read — https://policylayer.com/tools/io-github-iowarp-adios-mcp/aggregate-column-tool.md
- `analyze_file_access_patterns` — Read — https://policylayer.com/tools/io-github-iowarp-adios-mcp/analyze-file-access-patterns.md
- `analyze_log_statistics` — Read — https://policylayer.com/tools/io-github-iowarp-adios-mcp/analyze-log-statistics.md
- `analyze_mpiio_operations` — Read — https://policylayer.com/tools/io-github-iowarp-adios-mcp/analyze-mpiio-operations.md
- …and 173 more: https://policylayer.com/tools/io-github-iowarp-adios-mcp.md

## For agents

This record is a snapshot. Live verdicts and the full registry:

- Check every server in your MCP config at once: `npx -y policylayer stack`
- Vet a server before you add it: install the mcp-precheck skill — `npx skills add https://policylayer.com` (skill text: https://policylayer.com/skill.md)
- Query the registry over MCP: endpoint `https://api.policylayer.com/mcp` — tools `check_mcp_server`, `check_mcp_stack`, `check_tool`, `search_registry`, `get_change_events`

---

Source: the PolicyLayer MCP registry — one continuously verified record per MCP server. Full record: https://policylayer.com/registry?q=io-github-iowarp-adios-mcp · API: https://policylayer.com/registry/api · Policy library: https://policylayer.com/policies/io-github-iowarp-adios-mcp