# apply_codemod

Structural (AST-aware) or regex find-and-replace across files. Default engine

Agent View of the PolicyLayer registry record for `apply_codemod`. HTML page: https://policylayer.com/tools/nikolai-vysotskyi-trace-mcp/apply-codemod

## Facts

- Tool: `apply_codemod`
- Server: Trace (`nikolai-vysotskyi/trace-mcp`) — https://policylayer.com/tools/nikolai-vysotskyi-trace-mcp.md
- Homepage: https://github.com/nikolai-vysotskyi/trace-mcp
- Risk category: Write (Medium risk)
- Registry record: grade F, identity unverified
- Server rate-limited: no
- Parameters: 0
- Recommended policy verdict: Rate-limited

## Example call (MCP tools/call, JSON-RPC 2.0)

```json
{
  "jsonrpc": "2.0",
  "id": 1,
  "method": "tools/call",
  "params": {
    "name": "apply_codemod",
    "arguments": {}
  }
}
```

## Why apply_codemod is rated Medium

This tool creates or modifies code files reversibly through find-and-replace operations. While the changes could theoretically be undone (version control), the tool itself performs write operations that alter source files. It is not Destructive because it doesn't irreversibly delete data—replacements preserve file structure and are versionable.

From the tool's own definition: "Tool performs 'find-and-replace across files' which modifies source code content. The description explicitly states it applies structural transformations via AST or regex patterns, making it a code modification operation."

## Use case

AI agents use apply_codemod to create or update resources in Trace, usually the action step of a workflow, after the agent has gathered context. Every call changes real data in your Trace environment.

## Recommended policy (PolicyLayer)

Verdict: **Rate-limited**. Enforced by the PolicyLayer MCP gateway (https://policylayer.com/mcp-gateway) before a call reaches Trace:

```json
{
  "version": "1",
  "default": "deny",
  "tools": {
    "apply_codemod": {
      "limits": [
        {
          "counter": "apply_codemod_rate",
          "window": "minute",
          "max": 30,
          "scope": "grant"
        }
      ]
    }
  }
}
```

## Other tools on Trace (190)

- `delete_corpus` — Destructive — https://policylayer.com/tools/nikolai-vysotskyi-trace-mcp/delete-corpus.md
- `remove_dead_code` — Destructive — https://policylayer.com/tools/nikolai-vysotskyi-trace-mcp/remove-dead-code.md
- `repair_index` — Destructive — https://policylayer.com/tools/nikolai-vysotskyi-trace-mcp/repair-index.md
- `call_project_tool` — Execute — https://policylayer.com/tools/nikolai-vysotskyi-trace-mcp/call-project-tool.md
- `reindex` — Execute — https://policylayer.com/tools/nikolai-vysotskyi-trace-mcp/reindex.md
- `visualize_graph` — Execute — https://policylayer.com/tools/nikolai-vysotskyi-trace-mcp/visualize-graph.md
- `analyze_perf` — Read — https://policylayer.com/tools/nikolai-vysotskyi-trace-mcp/analyze-perf.md
- `assess_change_risk` — Read — https://policylayer.com/tools/nikolai-vysotskyi-trace-mcp/assess-change-risk.md
- `audit_config` — Read — https://policylayer.com/tools/nikolai-vysotskyi-trace-mcp/audit-config.md
- `benchmark_project` — Read — https://policylayer.com/tools/nikolai-vysotskyi-trace-mcp/benchmark-project.md
- `check_architecture` — Read — https://policylayer.com/tools/nikolai-vysotskyi-trace-mcp/check-architecture.md
- `check_claudemd_drift` — Read — https://policylayer.com/tools/nikolai-vysotskyi-trace-mcp/check-claudemd-drift.md
- `check_duplication` — Read — https://policylayer.com/tools/nikolai-vysotskyi-trace-mcp/check-duplication.md
- `check_edit_safe` — Read — https://policylayer.com/tools/nikolai-vysotskyi-trace-mcp/check-edit-safe.md
- `check_embedding_drift` — Read — https://policylayer.com/tools/nikolai-vysotskyi-trace-mcp/check-embedding-drift.md
- `check_quality_gates` — Read — https://policylayer.com/tools/nikolai-vysotskyi-trace-mcp/check-quality-gates.md
- `check_rename` — Read — https://policylayer.com/tools/nikolai-vysotskyi-trace-mcp/check-rename.md
- `compare_branches` — Read — https://policylayer.com/tools/nikolai-vysotskyi-trace-mcp/compare-branches.md
- `detect_antipatterns` — Read — https://policylayer.com/tools/nikolai-vysotskyi-trace-mcp/detect-antipatterns.md
- `detect_ast_clones` — Read — https://policylayer.com/tools/nikolai-vysotskyi-trace-mcp/detect-ast-clones.md
- `detect_communities` — Read — https://policylayer.com/tools/nikolai-vysotskyi-trace-mcp/detect-communities.md
- `detect_drift` — Read — https://policylayer.com/tools/nikolai-vysotskyi-trace-mcp/detect-drift.md
- `detect_topic_tunnels` — Read — https://policylayer.com/tools/nikolai-vysotskyi-trace-mcp/detect-topic-tunnels.md
- `diff_graph_snapshots` — Read — https://policylayer.com/tools/nikolai-vysotskyi-trace-mcp/diff-graph-snapshots.md
- `discover_claude_sessions` — Read — https://policylayer.com/tools/nikolai-vysotskyi-trace-mcp/discover-claude-sessions.md
- `discover_hermes_sessions` — Read — https://policylayer.com/tools/nikolai-vysotskyi-trace-mcp/discover-hermes-sessions.md
- `embed_repo` — Read — https://policylayer.com/tools/nikolai-vysotskyi-trace-mcp/embed-repo.md
- `explain_architecture` — Read — https://policylayer.com/tools/nikolai-vysotskyi-trace-mcp/explain-architecture.md
- `explain_symbol` — Read — https://policylayer.com/tools/nikolai-vysotskyi-trace-mcp/explain-symbol.md
- `export_decisions` — Read — https://policylayer.com/tools/nikolai-vysotskyi-trace-mcp/export-decisions.md
- …and 160 more: https://policylayer.com/tools/nikolai-vysotskyi-trace-mcp.md

## For agents

This record is a snapshot. Live verdicts and the full registry:

- Check every server in your MCP config at once: `npx -y policylayer stack`
- Vet a server before you add it: install the mcp-precheck skill — `npx skills add https://policylayer.com` (skill text: https://policylayer.com/skill.md)
- Query the registry over MCP: endpoint `https://api.policylayer.com/mcp` — tools `check_mcp_server`, `check_mcp_stack`, `check_tool`, `search_registry`, `get_change_events`

---

Source: the PolicyLayer MCP registry — one continuously verified record per MCP server. Full record: https://policylayer.com/registry?q=nikolai-vysotskyi-trace-mcp · API: https://policylayer.com/registry/api · Policy library: https://policylayer.com/policies/nikolai-vysotskyi-trace-mcp