Home / Token cost / AWS HealthOmics MCP Server

The AWS HealthOmics MCP Server MCP server costs 25,161 tokens before the first call.

Connect AWS HealthOmics MCP Server and its 71 tool definitions are loaded into the model's context on every request — 13% of a 200k window spent before your agent does anything.

QUICK ANSWER The AWS HealthOmics MCP Server MCP server's tool definitions consume 25,161 tokens — 23× the median MCP server (1,075 tokens). A scoped grant exposing only the tools you use cuts that roughly in proportion.

MEASURED FROM SCHEMAS 71 tools · 25,161 tokens · 13% of 200k · 2.5% of 1M Method →

What that buys before your agent starts working.

Tool definitions are overhead: they occupy context on every request and compete with your code, documents and conversation history for the same window.

200K WINDOW 13%
1M WINDOW 2.5%

Corpus context: AWS HealthOmics MCP Server ranks #19 of 1,659 measured MCP servers by definition cost. The median is 1,075 tokens, p90 is 6,119, and the heaviest (Fusionauth) is 183,337 — 92% of a 200k window on its own.

Where the 25,161 tokens go.

Each row is one tool definition as a tools/list entry — name, description and input schema — counted with o200k_base. Average: 354 tokens per tool.

ToolCategoryTokens% of server
CreateAHOWorkflowVersion Write 1,269 5.0%
CreateAHOWorkflow Write 1,264 5.0%
SearchGenomicsFiles Read 1,149 4.6%
GenerateAHORunTimeline Write 762 3.0%
StartAHORun Execute 757 3.0%
CreateContainerRegistryMap Write 719 2.9%
CloneContainerToECR Read 661 2.6%
StartAHORunBatch Execute 628 2.5%
CheckContainerAvailability Read 607 2.4%
StartAHOReferenceImportJob Execute 538 2.1%
AnalyzeAHORunPerformance Read 489 1.9%
LintAHOWorkflowBundle Read 456 1.8%
StartAHOReadSetImportJob Execute 440 1.7%
ListAHOReadSets Read 436 1.7%
GetAHORunManifestLogs Read 417 1.7%
GetAHOTaskLogs Read 415 1.6%
CreatePullThroughCacheForHealthOmics Write 408 1.6%
PackageAHOWorkflow Write 405 1.6%
DiagnoseAHORunFailure Execute 400 1.6%
GetAHORunLogs Read 396 1.6%
GetAHORunEngineLogs Read 395 1.6%
GetAHOWorkflow Read 366 1.5%
LintAHOWorkflowDefinition Read 354 1.4%
CreateAHORunCache Write 348 1.4%
CreateAHORunGroup Write 346 1.4%
CreateCodeConnection Write 345 1.4%
GetCodeConnection Read 342 1.4%
ListCodeConnections Read 339 1.3%
ListAHOReferences Read 326 1.3%
GrantHealthOmicsRepositoryAccess Write 320 1.3%
ListAHORuns Read 315 1.3%
ListECRRepositories Read 310 1.2%
CreateAHOSequenceStore Write 302 1.2%
ListPullThroughCacheRules Read 298 1.2%
StartAHOReadSetExportJob Execute 296 1.2%
ListAHORunsInBatch Read 296 1.2%
UpdateAHORunGroup Write 288 1.1%
ListAHOReferenceImportJobs Read 267 1.1%
UpdateAHOSequenceStore Write 265 1.1%
ListAHOBatches Read 260 1.0%
ListAHORunCaches Read 260 1.0%
ValidateHealthOmicsECRConfig Read 259 1.0%
GetAHOReferenceImportJob Read 240 1.0%
GetAHORun Read 240 1.0%
CreateAHOConfiguration Write 239 0.9%
GetAHOReferenceMetadata Read 238 0.9%
UpdateAHORunCache Write 235 0.9%
ListAHORunTasks Read 234 0.9%
ActivateAHOReadSets Write 231 0.9%
ListAHOReadSetExportJobs Read 218 0.9%
ListAHOReadSetImportJobs Read 218 0.9%
ListAHOWorkflowVersions Read 213 0.8%
ListAHORunGroups Read 212 0.8%
GetAHOReferenceStore Read 204 0.8%
ListAHOReferenceStores Read 203 0.8%
ListAHOSequenceStores Read 203 0.8%
GetAHOReadSetMetadata Read 195 0.8%
GetAHOReadSetExportJob Read 191 0.8%
GetAHOReadSetImportJob Read 191 0.8%
ListAHOWorkflows Read 185 0.7%
ListAHOConfigurations Read 181 0.7%
GetAHORunTask Read 177 0.7%
GetAHORunGroup Read 163 0.6%
DeleteAHORunBatch Destructive 162 0.6%
GetAHORunCache Read 161 0.6%
DeleteAHOBatch Destructive 160 0.6%
CancelAHORunBatch Destructive 158 0.6%
GetAHOSequenceStore Read 156 0.6%
GetAHOBatch Read 155 0.6%
GetAHOConfiguration Read 144 0.6%
DeleteAHOConfiguration Destructive 141 0.6%

Computed over 71 of 73 catalogued tools — the remainder have no published input schema, so the true total is slightly higher.

Most agents use a handful of these tools. They pay for all 71.

A PolicyLayer grant exposes only the tools you allow — ungranted definitions are filtered out of the tool list, so they never enter the context window. Estimates below assume typical-weight tools (354 tokens each).

Grant scopeDefinition costReduction
All 71 tools (no gateway) 25,161 tokens
3 granted tools ~1,063 tokens −96%
5 granted tools ~1,772 tokens −93%
10 granted tools ~3,544 tokens −86%

AWS HealthOmics MCP Server token-cost questions.

How many tokens does the AWS HealthOmics MCP Server MCP server use?+

Its 71 tool definitions total 25,161 tokens — 13% of a 200k context window — measured with tiktoken o200k_base over the serialised tools/list payload. Exact counts vary slightly by client and model.

Why does AWS HealthOmics MCP Server consume tokens before I send a message?+

MCP clients load every connected server's tool definitions — name, description, and input schema — into the model's context so it knows what it can call. That payload is charged against your context window on every request, whether or not a tool is used.

How do I reduce AWS HealthOmics MCP Server's token usage?+

Expose fewer tools. A PolicyLayer grant scopes AWS HealthOmics MCP Server to only the tools you allow — ungranted definitions are filtered out of the tool list, so they never enter the context window. A grant of 3 typical tools costs roughly 1,063 tokens, a 96% reduction.

Does deferred tool loading fix this?+

Partially, in some clients. Claude Code defers MCP tool schemas behind a tool-search step by default, and VS Code has experimental grouping — but you still pay tokens per search and reload, and Cursor, Windsurf and Gemini CLI load definitions upfront. Reducing the exposed tool set cuts the cost in every client.

How these numbers were measured.

01
Serialisation

Each tool is serialised as a tools/list entry — name, description, input schema — from the schemas in the PolicyLayer scan database. Clients differ slightly in framing, so treat counts as close estimates.

02
Tokeniser

tiktoken o200k_base (GPT-4o/o-series). Anthropic's current tokeniser isn't published, so Claude's exact counts will differ; for English text and JSON schemas the totals are close enough to treat these as estimates.

03
Deferred loading

Some clients now defer schema loading (Claude Code's tool search; VS Code experimental grouping). You still pay per search and reload — and Cursor, Windsurf and Gemini CLI load everything upfront.

Computed 05-06-2026 from the PolicyLayer scan database over 71 of 73 catalogued AWS HealthOmics MCP Server tools. Counts refresh with every site build.

Expose only the tools you use — the rest never enter your context.

A PolicyLayer grant scopes AWS HealthOmics MCP Server to the tools you actually allow. Ungranted definitions never load, and every call that does run is checked against policy first.

Free to start. No card required.

4,600+ MCP servers and 31,000+ tools scanned and risk-classified.

// GET IN TOUCH

Have a question or want to learn more? Send us a message.

Message sent.

We'll get back to you soon.