25 tools from the Biomcp MCP Server, categorised by risk level.
View the Biomcp policy →article_get Get detailed article information by PMID article_search Search literature across multiple backends with federated search and deduplication batch_get Get multiple entities in parallel discover Free-text concept resolution - find entities matching a free-text query disease_drugs Get drugs for a disease via OpenTargets disease_get Get detailed disease information by ID disease_search Search for diseases by name, phenotype, or keyword disease_trials Get clinical trials for a disease drug_get Get detailed drug information by name drug_search Search for drugs by name, mechanism, or keyword drug_trials Find clinical trials for a drug gene_articles Find articles about a gene gene_diseases Get diseases associated with a gene. Requires DISGENET_API_KEY environment variable for DisGeNET data; falls back to OpenTargets gene-disease assoc... gene_drugs Find drugs targeting a gene gene_enrich Perform pathway enrichment analysis for a gene list gene_get Get detailed gene information by symbol gene_search Search for genes by symbol, name, or keyword gene_trials Find clinical trials for a gene trial_get Get detailed trial information by NCT ID trial_search Search clinical trials by condition, intervention, or keyword variant_get Get detailed variant information with optional sections. Core data (id, gene, rsid, significance) is always returned at the top level. Use sections... variant_oncokb Get OncoKB annotations for a variant in a cancer gene. Requires ONCOKB_TOKEN environment variable. variant_search Search for variants. Use structured parameters for best results:
- rsid: e.g. query="rs113488022"
- HGVS: e.g. query="NM_004333.4:c.1799T>A"
- Gene... variant_trials Find clinical trials for a variant The Biomcp MCP server exposes 25 tools across 2 categories: Read, Write.
Use Intercept, the open-source MCP proxy. Write YAML rules for each tool — rate limits, argument validation, or deny rules — then run Intercept in front of the Biomcp server.
Biomcp tools are categorised as Read (24), Write (1). Each category has a recommended default policy.
Deterministic policy on every MCP tool call. Per-identity grants. Full audit log.