substructure_info
A read tool on the Origene MCP server.
This record as markdown: /tools/gentel-lab-origenemcp/substructure-info.md
What substructure_info does on OrigeneMCP
AI agents call substructure_info to retrieve information from OrigeneMCP without modifying anything. It is typically the context-gathering step in research, monitoring, and reporting workflows, before the agent takes action elsewhere.
Why substructure_info is rated Low
Based on naming convention within a biomedical database platform, 'substructure_info' most likely retrieves chemical or structural information about molecules without side effects. The empty description prevents higher confidence, but the 'info' suffix and sibling tools (all retrieval-oriented) support Read classification.
From the tool's definition Tool name 'substructure_info' suggests retrieval of information about chemical substructures, consistent with the biomedical context of OrigeneMCP. No verb indicating modification, deletion, or execution. Description is empty, which lowers confidence.
Attacks that exploit this kind of access
The rule that runs substructure_info safely
PolicyLayer is an MCP gateway: it sits between your AI agents and OrigeneMCP, and checks every tool call against a rule you set before the call runs. Nothing changes on the server itself. For substructure_info, this is the rule to start with:
substructure_info is read-only, so it stays allowed. Everything else on the server is denied unless you say otherwise.
The button opens the PolicyLayer dashboard: create your workspace, connect OrigeneMCP, apply this rule, and every substructure_info call is checked against it from then on.
Questions about substructure_info
substructure_info is a read tool on the Origene MCP server. It is categorised as a Read tool in the OrigeneMCP MCP Server, which means it retrieves data without modifying state.
Register the Origene MCP server in PolicyLayer and add a rule for substructure_info: allow, deny, rate-limit, or require approval. Point your MCP client at the PolicyLayer proxy URL and the rule is enforced on every call, before it reaches OrigeneMCP. Nothing to install.
substructure_info is a Read tool with low risk. Read-only tools are generally safe to allow by default.
Yes. Add a rate_limit block to the substructure_info rule in your PolicyLayer policy. For example, setting max: 10 and window: 60 limits the tool to 10 calls per minute. Rate limits are tracked per agent session and reset automatically.
Set action: deny in the PolicyLayer policy for substructure_info. The AI agent will receive a policy violation error and cannot call the tool. You can also include a reason field to explain why the tool is blocked.
substructure_info is provided by the Origene MCP server (gentel-lab/origenemcp). PolicyLayer sits as a proxy in front of this server to enforce policies before tool calls reach the server.
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