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// MCP SERVER RECORD

OrigeneMCP

Unverified
REPOgentel-lab/origenemcp
CRisk gradenotable
Catalogue entry updated 36 days ago
Auth postureNot probedno remote endpoint probed yet
Tools4392 Execute · 4 Write · 431 Read · 2 Other
Worst categoryExecutegrade tracks the peak, not the average
Capability mix
Execute 2Write 4Read 431Other 2
What it can reach
Ingests untrusted inputTouches secretsReaches networkRuns codeTouches filesChanges permissionsSends external commsPersistsDeletes dataMoves money
Tools 439
post_vep_hgvsExecuteMediumpost_vep_idExecuteMediumpost_archive_idWriteMediumpost_sequence_idWriteMediumpost_variant_recoderWriteMedium
View all 439 tools
post_variationWriteMediumcheck_genome_accessionsReadLowcheck_virus_accessionsReadLowclinvar_find_single_mutationReadLowclinvar_get_best_refseqid_by_sequenceReadLowclinvar_query_sequence_variantsReadLowclinvar_query_variant_significanceReadLowdepmap_comprehensive_analysisReadMediumdepmap_get_dependencyReadLowdepmap_get_expressionReadLowdepmap_get_mutationReadLowensembl_get_genes_by_bandReadLowget_activityReadLowget_activity_by_idReadLowget_activity_by_idsReadLowget_activity_supplementary_data_by_activityReadLowget_activity_supplementary_data_by_activity_by_idReadLowget_activity_supplementary_data_by_activity_by_idsReadLowget_alignment_regionReadLowget_all_interaction_partners_of_the_protein_setReadLowget_archive_idReadLowget_assayReadLowget_assay_by_idReadLowget_assay_by_idsReadLowget_assay_classReadLowget_assay_class_by_idReadLowget_assay_class_by_idsReadLowget_assay_summary_by_cidReadLowget_assay_summary_by_sidReadLowget_assembly_region_infoReadLowget_associated_diseases_by_drug_nameReadLowget_associated_diseases_phenotypes_by_target_nameReadLowget_associated_drugs_by_disease_nameReadLowget_associated_drugs_by_target_nameReadLowget_associated_phenotypes_by_disease_nameReadLowget_associated_targets_by_disease_nameReadLowget_associated_targets_by_drug_nameReadLowget_atc_classReadLowget_atc_class_by_idReadLowget_atc_class_by_idsReadLowget_best_similarity_hits_between_speciesReadLowget_binding_siteReadLowget_binding_site_by_idReadLowget_binding_site_by_idsReadLowget_biological_mouse_models_by_target_nameReadLowget_biosample_reportReadLowget_biotherapeuticReadLowget_biotherapeutic_by_idReadLowget_biotherapeutic_by_idsReadLowget_cafe_genetree_idReadLowget_cafe_genetree_member_idReadLowget_cafe_genetree_member_symbolReadLowget_cell_lineReadLowget_cell_line_by_idReadLowget_cell_line_by_idsReadLowget_chembl_id_lookupReadLowget_chembl_id_lookup_by_idReadLowget_chembl_id_lookup_by_idsReadLowget_chembl_releaseReadLowget_chembl_release_by_idReadLowget_chembl_release_by_idsReadLowget_chemical_probes_by_target_nameReadLowget_chromosome_sequenceReadLowget_chromosome_summaryReadLowget_cids_by_formulaReadLowget_cids_by_smilesReadLowget_compound_by_cidReadLowget_compound_by_nameReadLowget_compound_chembl_id_by_nameReadLowget_compound_dictReadLowget_compound_property_by_nameReadLowget_compound_recordReadLowget_compound_record_by_idReadLowget_compound_record_by_idsReadLowget_compound_structural_alertReadLowget_compound_structural_alert_by_idReadLowget_compound_structural_alert_by_idsReadLowget_compound_synonyms_by_nameReadLowget_compounds_3dReadLowget_compounds_by_formulaReadLowget_compounds_by_smilesReadLowget_compounds_dictReadLowget_conformers_by_cidReadLowget_cytobandReadLowget_description_by_aidReadLowget_description_by_cidReadLowget_description_by_sidReadLowget_disease_ancestors_parents_by_nameReadLowget_disease_descendants_children_by_nameReadLowget_disease_description_by_nameReadLowget_disease_efo_idReadLowget_disease_locations_by_nameReadLowget_disease_synonyms_by_nameReadLowget_disease_therapeutic_areas_by_nameReadLowget_documentReadLowget_document_by_idReadLowget_document_by_idsReadLowget_document_similarityReadLowget_document_similarity_by_idReadLowget_document_similarity_by_idsReadLowget_drugReadLowget_drug_by_idReadLowget_drug_by_idsReadLowget_drug_chembl_id_by_nameReadLowget_drug_indicationReadLowget_drug_indication_by_idReadLowget_drug_indication_by_idsReadLowget_drug_indications_by_nameReadLowget_drug_mechanisms_of_action_by_nameReadLowget_drug_warningReadLowget_drug_warning_idReadLowget_drug_warning_idsReadLowget_drug_warnings_by_nameReadLowget_enumsReadLowget_field_size_statsReadLowget_field_value_statsReadLowget_functional_annotationReadLowget_functional_enrichmentReadLowget_ga4gh_beaconReadLowget_ga4gh_beacon_queryReadLowget_ga4gh_callsetsReadLowget_ga4gh_datasetsReadLowget_ga4gh_featuresReadLowget_ga4gh_featuresetsReadLowget_ga4gh_referencesReadLowget_ga4gh_referencesetsReadLowget_ga4gh_variantannotationsetsReadLowget_ga4gh_variantsReadLowget_ga4gh_variantsetsReadLowget_gene_by_accessionReadLowget_gene_by_accession_dataset_reportReadLowget_gene_by_accession_product_reportReadLowget_gene_by_idsReadLowget_gene_by_symbol_dataset_reportReadLowget_gene_by_symbol_product_reportReadLowget_gene_by_taxonReadLowget_gene_by_taxon_dataset_reportReadLowget_gene_by_taxon_product_reportReadLowget_gene_centric_by_accessionReadLowget_gene_centric_by_proteomeReadLowget_gene_counts_by_taxonReadLowget_gene_dataset_report_by_idReadLowget_gene_dataset_report_by_locus_tagReadLowget_gene_download_summary_by_idReadLowget_gene_links_by_idReadLowget_gene_metadata_by_gene_nameReadMediumget_gene_orthologsReadLowget_gene_product_report_by_idReadLowget_gene_product_report_by_locus_tagReadLowget_gene_specific_expression_in_cancer_typeReadLowget_gene_summary_by_geneidReadLowget_general_info_by_compound_nameReadLowget_general_info_by_disease_nameReadLowget_general_info_by_protein_or_gene_nameReadLowget_genes_in_regionReadLowget_genetree_idReadLowget_genetree_member_idReadLowget_genetree_member_symbolReadLowget_genome_annotation_reportReadLowget_genome_annotation_summaryReadLowget_genome_by_accessionReadLowget_genome_dataset_report_by_accessionReadLowget_genome_dataset_report_by_assembly_nameReadLowget_genome_dataset_report_by_bioprojectReadLowget_genome_dataset_report_by_biosampleReadLowget_genome_dataset_report_by_taxonReadLowget_genome_dataset_report_by_wgsReadLowget_genome_downloadReadLowget_genome_download_summaryReadLowget_genome_linksReadLowget_genome_revision_historyReadLowget_genome_sequence_reportsReadLowget_go_slimReadLowget_go_slim_idReadLowget_go_slim_idsReadLowget_homology_idReadLowget_homology_symbolReadLowget_imageReadLowget_info_analysisReadLowget_info_assemblyReadLowget_info_biotypesReadLowget_info_biotypes_groupsReadLowget_info_biotypes_nameReadLowget_info_compara_methodsReadLowget_info_compara_species_setsReadLowget_info_comparasReadLowget_info_dataReadLowget_info_divisionsReadLowget_info_eg_versionReadLowget_info_external_dbsReadLowget_info_genomesReadLowget_info_genomes_accessionReadLowget_info_genomes_assemblyReadLowget_info_genomes_divisionReadLowget_info_genomes_taxonomyReadLowget_info_pingReadLowget_info_restReadLowget_info_softwareReadLowget_info_speciesReadLowget_info_variationReadLowget_info_variation_consequence_typesReadLowget_info_variation_populationsReadLowget_isomeric_smilesReadLowget_iupac_nameReadLowget_ldReadLowget_ld_pairwiseReadLowget_ld_regionReadLowget_lookup_idReadLowget_lookup_symbolReadLowget_mapReadLowget_map_cdnaReadLowget_map_cdsReadLowget_map_translationReadLowget_mechanismReadLowget_mechanism_idReadLowget_mechanism_idsReadLowget_metabolismReadLowget_metabolism_idReadLowget_metabolism_idsReadLowget_metadataReadLowget_molecular_formulaReadLowget_molecular_weightReadLowget_moleculeReadLowget_molecule_formReadLowget_molecule_form_idReadLowget_molecule_form_idsReadLowget_molecule_idReadLowget_molecule_idsReadLowget_ontology_ancestorsReadLowget_ontology_ancestors_chartReadLowget_ontology_descendantsReadLowget_ontology_idReadLowget_ontology_nameReadLowget_organelle_by_taxon_dataset_reportReadLowget_organelle_dataset_reportReadLowget_organelle_downloadReadLowget_organismReadLowget_organism_idReadLowget_organism_idsReadLowget_overlap_idReadLowget_overlap_regionReadLowget_overlap_translationReadLowget_phenotype_accessionReadLowget_phenotype_geneReadLowget_phenotype_regionReadLowget_ppi_enrichmentReadLowget_prokaryote_gene_dataset_by_refseq_protein_accessionReadLowget_protein_classificationReadLowget_protein_classification_idReadLowget_protein_classification_idsReadLowget_protein_summary_by_accessionReadLowget_proteome_by_idReadLowget_pubchem_compound_by_cidReadLowget_publications_by_disease_nameReadLowget_publications_by_drug_nameReadLowget_publications_by_target_nameReadLowget_search_areasReadLowget_sequenceReadLowget_sequence_assembliesReadLowget_sequence_idReadLowget_sequence_regionReadLowget_sids_by_nameReadLowget_similar_entities_by_disease_nameReadLowget_similar_entities_by_drug_nameReadLowget_similar_entities_by_target_nameReadLowget_similarity_scores_of_the_protein_setReadLowget_similarity_smilesReadLowget_sourceReadLowget_source_idReadLowget_source_idsReadLowget_species_binding_matrixReadLowget_statusReadLowget_string_network_interactionReadLowget_studiesReadMediumget_studyReadLowget_study_size_statsReadLowget_substance_by_nameReadLowget_substance_by_sidReadLowget_substance_by_sid_pcpReadLowget_substances_by_name_pcpReadLowget_substances_source_idReadLowget_substances_synonymsReadLowget_substructure_casReadLowget_synonymsReadLowget_targetReadLowget_target_classes_by_nameReadLowget_target_componentReadLowget_target_component_idReadLowget_target_component_idsReadLowget_target_constraint_info_by_nameReadLowget_target_disease_evidence_by_nameReadLowget_target_enabling_packages_by_nameReadLowget_target_ensembl_idReadLowget_target_gene_ontology_by_nameReadLowget_target_genomic_location_by_nameReadLowget_target_homologues_by_nameReadLowget_target_idReadLowget_target_idsReadLowget_target_interactions_by_nameReadLowget_target_relationReadLowget_target_relation_idReadLowget_target_relation_idsReadLowget_target_safety_profile_by_nameReadLowget_target_subcellular_locations_by_nameReadLowget_target_synonyms_by_nameReadLowget_target_tractability_by_nameReadLowget_taxonomyReadLowget_taxonomy_classificationReadLowget_taxonomy_dataset_reportReadLowget_taxonomy_downloadReadLowget_taxonomy_filtered_subtreeReadLowget_taxonomy_idReadLowget_taxonomy_linksReadLowget_taxonomy_nameReadLowget_taxonomy_name_reportReadLowget_taxonomy_related_idsReadLowget_taxonomy_summary_by_taxonomyidReadLowget_taxonomy_taxon_suggestReadLowget_tissueReadLowget_tissue_idReadLowget_tissue_idsReadLowget_track_dataReadLowget_transcript_haplotypesReadLowget_uniparc_cross_references_by_upiReadLowget_uniparc_entry_by_upiReadLowget_uniparc_light_entry_by_upiReadLowget_uniprotkb_entry_by_accessionReadLowget_uniref_cluster_by_idReadLowget_uniref_cluster_members_by_idReadLowget_uniref_light_cluster_by_idReadLowget_variant_recoderReadLowget_variationReadLowget_variation_pmcidReadLowget_variation_pmidReadMediumget_vep_hgvsReadLowget_vep_idReadLowget_vep_regionReadMediumget_versionReadLowget_virus_annotation_reportReadLowget_virus_by_taxon_annotation_reportReadLowget_virus_by_taxon_genomeReadLowget_virus_by_taxon_genome_tableReadLowget_virus_dataset_reportReadLowget_virus_genome_downloadReadLowget_xlogpReadLowget_xref_sourceReadLowget_xref_source_idReadLowget_xref_source_idsReadLowget_xrefs_idReadLowget_xrefs_nameReadLowget_xrefs_symbolReadLowgsea_get_genelist_from_genesetnameReadLowgtrd_entry_to_target_genesReadLowgtrd_gene_to_entryReadLowjina_searchReadLowkegg_convReadLowkegg_findReadLowkegg_getReadLowkegg_infoReadLowkegg_linkReadLowkegg_listReadLowlist_chromosomesReadLowlist_genomesReadLowlist_hub_tracksReadLowlist_public_hubsReadLowlist_tcga_cancer_typesReadLowlist_tracksReadLowmapping_identifiersReadLowmirdb_get_geneset_by_mirnameReadLowmousemine_get_geneset_from_mpidReadLowpaper_searchReadLowpdb_get_aggregation_group_provenanceReadLowpdb_get_branched_entityReadLowpdb_get_branched_entity_instanceReadLowpdb_get_chemical_componentReadLowpdb_get_drugbank_annotationsReadLowpdb_get_entry_groupsReadLowpdb_get_nonpolymer_entityReadLowpdb_get_nonpolymer_entity_groupsReadLowpdb_get_nonpolymer_entity_instanceReadLowpdb_get_pdb_cluster_data_aggregationReadLowpdb_get_pdb_cluster_data_aggregation_methodReadLowpdb_get_polymer_entityReadLowpdb_get_polymer_entity_groupsReadLowpdb_get_polymer_entity_instanceReadLowpdb_get_polymer_interfaceReadLowpdb_get_pubmed_annotationsReadLowpdb_get_residue_chainsReadLowpdb_get_structural_assemblyReadLowpdb_get_structureReadLowpdb_get_uniprot_annotationsReadLowphipster_get_hpid_list_by_vpidReadLowphipster_hpid_list_to_hpname_listReadLowphipster_vpname2vpidReadLowpost_ga4gh_beacon_queryReadLowpost_ga4gh_callsets_searchReadLowpost_ga4gh_datasets_searchReadLowpost_ga4gh_featuresets_searchReadLowpost_ga4gh_references_searchReadLowpost_ga4gh_referencesets_searchReadMediumpost_ga4gh_variantannotations_searchReadMediumpost_ga4gh_variantannotationsets_searchReadLowpost_ga4gh_variants_searchReadMediumpost_ga4gh_variantsets_searchReadLowpost_lookup_symbolReadLowpost_sequence_regionReadLowpost_vep_regionReadLowsearch_activityReadLowsearch_assayReadLowsearch_chembl_id_lookupReadLowsearch_documentReadLowsearch_gene_centricReadLowsearch_moleculeReadLowsearch_protein_classificationReadLowsearch_proteomesReadLowsearch_pubchem_advancedReadLowsearch_pubchem_by_nameReadLowsearch_pubchem_by_smilesReadLowsearch_targetReadLowsearch_uniparc_entriesReadLowsearch_uniprotkb_entriesReadLowsearch_uniref_clustersReadLowstream_gene_centricReadLowstream_proteomesReadLowstream_uniparc_cross_references_by_upiReadLowstream_uniparc_entriesReadLowstream_uniprotkb_entriesReadLowstream_uniref_clustersReadLowsubstructure_infoReadLowtavily_searchReadLowtcga_differential_expression_analysisReadMediumtcga_immune_correlation_analysisReadLowpost_ga4gh_features_searchOtherLowpost_lookup_idOtherLow
Change history
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Recommended policy
post_vep_hgvsrequire approval
post_archive_idrate limit
Read-only toolsallow
Full policy breakdown with enforcement rules →

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