clinvar_get_best_refseqid_by_sequence
A read tool on the Origene MCP server.
This record as markdown: /tools/gentel-lab-origenemcp/clinvar-get-best-refseqid-by-sequence.md
What clinvar_get_best_refseqid_by_sequence does on OrigeneMCP
AI agents call clinvar_get_best_refseqid_by_sequence to retrieve information from OrigeneMCP without modifying anything. It is typically the context-gathering step in research, monitoring, and reporting workflows, before the agent takes action elsewhere.
Why clinvar_get_best_refseqid_by_sequence is rated Low
The tool's name suggests a read-only query operation against the ClinVar biomedical database. It retrieves or looks up a reference sequence identifier based on sequence input—a data retrieval pattern consistent with the 'Read' category.
From the tool's definition Tool name contains 'get' and 'clinvar' (ClinVar is a public database of genetic variants). The function appears to retrieve reference sequence IDs by matching sequence data, with no indication of modification or deletion capabilities.
Attacks that exploit this kind of access
The rule that runs clinvar_get_best_refseqid_by_sequence safely
PolicyLayer is an MCP gateway: it sits between your AI agents and OrigeneMCP, and checks every tool call against a rule you set before the call runs. Nothing changes on the server itself. For clinvar_get_best_refseqid_by_sequence, this is the rule to start with:
clinvar_get_best_refseqid_by_sequence is read-only, so it stays allowed. Everything else on the server is denied unless you say otherwise.
The button opens the PolicyLayer dashboard: create your workspace, connect OrigeneMCP, apply this rule, and every clinvar_get_best_refseqid_by_sequence call is checked against it from then on.
Questions about clinvar_get_best_refseqid_by_sequence
clinvar_get_best_refseqid_by_sequence is a read tool on the Origene MCP server. It is categorised as a Read tool in the OrigeneMCP MCP Server, which means it retrieves data without modifying state.
Register the Origene MCP server in PolicyLayer and add a rule for clinvar_get_best_refseqid_by_sequence: allow, deny, rate-limit, or require approval. Point your MCP client at the PolicyLayer proxy URL and the rule is enforced on every call, before it reaches OrigeneMCP. Nothing to install.
clinvar_get_best_refseqid_by_sequence is a Read tool with low risk. Read-only tools are generally safe to allow by default.
Yes. Add a rate_limit block to the clinvar_get_best_refseqid_by_sequence rule in your PolicyLayer policy. For example, setting max: 10 and window: 60 limits the tool to 10 calls per minute. Rate limits are tracked per agent session and reset automatically.
Set action: deny in the PolicyLayer policy for clinvar_get_best_refseqid_by_sequence. The AI agent will receive a policy violation error and cannot call the tool. You can also include a reason field to explain why the tool is blocked.
clinvar_get_best_refseqid_by_sequence is provided by the Origene MCP server (gentel-lab/origenemcp). PolicyLayer sits as a proxy in front of this server to enforce policies before tool calls reach the server.
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