Find HPO phenotypes asosciated with the specified disease.
AI agents call get_associated_phenotypes_by_disease_name to retrieve information from OrigeneMCP without modifying anything — typically the context-gathering step in research, monitoring, and reporting workflows, before the agent takes action elsewhere.
This is a straightforward lookup tool that queries a database to return phenotype information linked to a disease name. It performs no data modification, deletion, code execution, or financial operations. The blast radius of misuse is minimal—returning incorrect or irrelevant phenotype associations poses no immediate harm to systems or data integrity. Classification as Read is appropriate.
From the tool's definition The tool 'get_associated_phenotypes_by_disease_name' retrieves HPO phenotypes associated with a disease. The verb 'Find' and 'associated with' indicate data retrieval with no modification or side effects.
Documented attack patterns abuse exactly the kind of access get_associated_phenotypes_by_disease_name gives an agent:
PolicyLayer is an MCP gateway — it sits between your AI agents and OrigeneMCP, and nothing reaches the server without passing your rules. This is the rule we recommend for get_associated_phenotypes_by_disease_name:
{
"version": "1",
"default": "deny",
"tools": {
"get_associated_phenotypes_by_disease_name": {}
}
}get_associated_phenotypes_by_disease_name is read-only, so it stays allowed — but everything else on the server is denied unless you say otherwise.
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Find HPO phenotypes asosciated with the specified disease. It is categorised as a Read tool in the OrigeneMCP MCP Server, which means it retrieves data without modifying state.
Register the Origene MCP server in PolicyLayer and add a rule for get_associated_phenotypes_by_disease_name: allow, deny, rate-limit, or require approval. Point your MCP client at the PolicyLayer proxy URL and the rule is enforced on every call, before it reaches OrigeneMCP. Nothing to install.
get_associated_phenotypes_by_disease_name is a Read tool with low risk. Read-only tools are generally safe to allow by default.
Yes. Add a rate_limit block to the get_associated_phenotypes_by_disease_name rule in your PolicyLayer policy. For example, setting max: 10 and window: 60 limits the tool to 10 calls per minute. Rate limits are tracked per agent session and reset automatically.
Set action: deny in the PolicyLayer policy for get_associated_phenotypes_by_disease_name. The AI agent will receive a policy violation error and cannot call the tool. You can also include a reason field to explain why the tool is blocked.
get_associated_phenotypes_by_disease_name is provided by the Origene MCP server (gentel-lab/origenemcp). PolicyLayer sits as a proxy in front of this server to enforce policies before tool calls reach the server.
Start from OrigeneMCP, add the rest of your stack, and see everything your agents can call. Then put policy on all of it.
Free to start. No card required.
439 OrigeneMCP tools catalogued and risk-classified — across an index of 43,000+ MCP servers.