get_ga4gh_referencesets

A read tool on the Origene MCP server.

SERVEROrigeneMCP SOURCEgentel-lab/origenemcp

Low RISK CLASS

Category Read

Parameters 00 required

Recommended Allowedsee the rule below

Registry record Grade C, identity unverified Pull the record →

This record as markdown: /tools/gentel-lab-origenemcp/get-ga4gh-referencesets.md

WHAT IT DOES

What get_ga4gh_referencesets does on OrigeneMCP

AI agents call get_ga4gh_referencesets to retrieve information from OrigeneMCP without modifying anything. It is typically the context-gathering step in research, monitoring, and reporting workflows, before the agent takes action elsewhere.

RISK

Why get_ga4gh_referencesets is rated Low

The 'get_' prefix strongly suggests a read-only retrieval operation for accessing GA4GH reference sets, which are static reference data used in genomic analysis. This is consistent with sibling tools that query and retrieve biomedical data (clinvar_query_*, depmap_get_*). No indication of write, delete, execute, or financial operations.

From the tool's definition Tool name 'get_ga4gh_referencesets' uses 'get' verb indicating data retrieval. GA4GH (Global Alliance for Genomics and Health) reference sets are standard biomedical reference data structures used in genomic research.

Attacks that exploit this kind of access

RECOMMENDED RULE

The rule that runs get_ga4gh_referencesets safely

PolicyLayer is an MCP gateway: it sits between your AI agents and OrigeneMCP, and checks every tool call against a rule you set before the call runs. Nothing changes on the server itself. For get_ga4gh_referencesets, this is the rule to start with:

get_ga4gh_referencesets Allowed

get_ga4gh_referencesets is read-only, so it stays allowed. Everything else on the server is denied unless you say otherwise.

View as policy code

policy.json

{
  "version": "1",
  "default": "deny",
  "tools": {
    "get_ga4gh_referencesets": {}
  }
}

ALLOW ONLY THIS TOOL → Instant setup, no code required.

The button opens the PolicyLayer dashboard: create your workspace, connect OrigeneMCP, apply this rule, and every get_ga4gh_referencesets call is checked against it from then on.

FAQ

Questions about get_ga4gh_referencesets

What does the get_ga4gh_referencesets tool do? +

get_ga4gh_referencesets is a read tool on the Origene MCP server. It is categorised as a Read tool in the OrigeneMCP MCP Server, which means it retrieves data without modifying state.

How do I enforce a policy on get_ga4gh_referencesets? +

Register the Origene MCP server in PolicyLayer and add a rule for get_ga4gh_referencesets: allow, deny, rate-limit, or require approval. Point your MCP client at the PolicyLayer proxy URL and the rule is enforced on every call, before it reaches OrigeneMCP. Nothing to install.

What risk level is get_ga4gh_referencesets? +

get_ga4gh_referencesets is a Read tool with low risk. Read-only tools are generally safe to allow by default.

Can I rate-limit get_ga4gh_referencesets? +

Yes. Add a rate_limit block to the get_ga4gh_referencesets rule in your PolicyLayer policy. For example, setting max: 10 and window: 60 limits the tool to 10 calls per minute. Rate limits are tracked per agent session and reset automatically.

How do I block get_ga4gh_referencesets completely? +

Set action: deny in the PolicyLayer policy for get_ga4gh_referencesets. The AI agent will receive a policy violation error and cannot call the tool. You can also include a reason field to explain why the tool is blocked.

What MCP server provides get_ga4gh_referencesets? +

get_ga4gh_referencesets is provided by the Origene MCP server (gentel-lab/origenemcp). PolicyLayer sits as a proxy in front of this server to enforce policies before tool calls reach the server.

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