get_gene_counts_by_taxon
A read tool on the Origene MCP server.
This record as markdown: /tools/gentel-lab-origenemcp/get-gene-counts-by-taxon.md
What get_gene_counts_by_taxon does on OrigeneMCP
AI agents call get_gene_counts_by_taxon to retrieve information from OrigeneMCP without modifying anything. It is typically the context-gathering step in research, monitoring, and reporting workflows, before the agent takes action elsewhere.
Why get_gene_counts_by_taxon is rated Low
This tool queries a biomedical database to retrieve pre-computed or aggregated gene count statistics grouped by taxon. It performs data retrieval without modifying, deleting, or executing any operations. The operation has minimal blast radius—misuse would only return irrelevant or unexpected data, not cause harm. This is a classic Read operation: fetch/query biomedical reference data.
From the tool's definition Tool name 'get_gene_counts_by_taxon' and description 'Get gene counts by taxon' indicate a query operation that retrieves aggregated gene count data organized by taxonomic classification.
Attacks that exploit this kind of access
The rule that runs get_gene_counts_by_taxon safely
PolicyLayer is an MCP gateway: it sits between your AI agents and OrigeneMCP, and checks every tool call against a rule you set before the call runs. Nothing changes on the server itself. For get_gene_counts_by_taxon, this is the rule to start with:
get_gene_counts_by_taxon is read-only, so it stays allowed. Everything else on the server is denied unless you say otherwise.
The button opens the PolicyLayer dashboard: create your workspace, connect OrigeneMCP, apply this rule, and every get_gene_counts_by_taxon call is checked against it from then on.
Questions about get_gene_counts_by_taxon
get_gene_counts_by_taxon is a read tool on the Origene MCP server. It is categorised as a Read tool in the OrigeneMCP MCP Server, which means it retrieves data without modifying state.
Register the Origene MCP server in PolicyLayer and add a rule for get_gene_counts_by_taxon: allow, deny, rate-limit, or require approval. Point your MCP client at the PolicyLayer proxy URL and the rule is enforced on every call, before it reaches OrigeneMCP. Nothing to install.
get_gene_counts_by_taxon is a Read tool with low risk. Read-only tools are generally safe to allow by default.
Yes. Add a rate_limit block to the get_gene_counts_by_taxon rule in your PolicyLayer policy. For example, setting max: 10 and window: 60 limits the tool to 10 calls per minute. Rate limits are tracked per agent session and reset automatically.
Set action: deny in the PolicyLayer policy for get_gene_counts_by_taxon. The AI agent will receive a policy violation error and cannot call the tool. You can also include a reason field to explain why the tool is blocked.
get_gene_counts_by_taxon is provided by the Origene MCP server (gentel-lab/origenemcp). PolicyLayer sits as a proxy in front of this server to enforce policies before tool calls reach the server.
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