get_gene_summary_by_geneid

Get summary information for a gene by Gene ID.

SERVEROrigeneMCP SOURCEgentel-lab/origenemcp

Low RISK CLASS

Category Read

Parameters 00 required

Recommended Allowedsee the rule below

Registry record Grade C, identity unverified Pull the record →

This record as markdown: /tools/gentel-lab-origenemcp/get-gene-summary-by-geneid.md

WHAT IT DOES

What get_gene_summary_by_geneid does on OrigeneMCP

AI agents call get_gene_summary_by_geneid to retrieve information from OrigeneMCP without modifying anything. It is typically the context-gathering step in research, monitoring, and reporting workflows, before the agent takes action elsewhere.

RISK

Why get_gene_summary_by_geneid is rated Low

This tool retrieves and returns existing gene summary data indexed by Gene ID. There are no mutations to data, no code execution, no financial implications, and no destructive operations. It is a straightforward information retrieval function typical of biomedical database queries, placing it squarely in the Read category with low severity risk.

From the tool's definition Tool name 'get_gene_summary_by_geneid' and description 'Get summary information for a gene by Gene ID' indicate a retrieval operation.

Attacks that exploit this kind of access

RECOMMENDED RULE

The rule that runs get_gene_summary_by_geneid safely

PolicyLayer is an MCP gateway: it sits between your AI agents and OrigeneMCP, and checks every tool call against a rule you set before the call runs. Nothing changes on the server itself. For get_gene_summary_by_geneid, this is the rule to start with:

get_gene_summary_by_geneid Allowed

get_gene_summary_by_geneid is read-only, so it stays allowed. Everything else on the server is denied unless you say otherwise.

View as policy code

policy.json

{
  "version": "1",
  "default": "deny",
  "tools": {
    "get_gene_summary_by_geneid": {}
  }
}

ALLOW ONLY THIS TOOL → Instant setup, no code required.

The button opens the PolicyLayer dashboard: create your workspace, connect OrigeneMCP, apply this rule, and every get_gene_summary_by_geneid call is checked against it from then on.

FAQ

Questions about get_gene_summary_by_geneid

What does the get_gene_summary_by_geneid tool do? +

Get summary information for a gene by Gene ID. It is categorised as a Read tool in the OrigeneMCP MCP Server, which means it retrieves data without modifying state.

How do I enforce a policy on get_gene_summary_by_geneid? +

Register the Origene MCP server in PolicyLayer and add a rule for get_gene_summary_by_geneid: allow, deny, rate-limit, or require approval. Point your MCP client at the PolicyLayer proxy URL and the rule is enforced on every call, before it reaches OrigeneMCP. Nothing to install.

What risk level is get_gene_summary_by_geneid? +

get_gene_summary_by_geneid is a Read tool with low risk. Read-only tools are generally safe to allow by default.

Can I rate-limit get_gene_summary_by_geneid? +

Yes. Add a rate_limit block to the get_gene_summary_by_geneid rule in your PolicyLayer policy. For example, setting max: 10 and window: 60 limits the tool to 10 calls per minute. Rate limits are tracked per agent session and reset automatically.

How do I block get_gene_summary_by_geneid completely? +

Set action: deny in the PolicyLayer policy for get_gene_summary_by_geneid. The AI agent will receive a policy violation error and cannot call the tool. You can also include a reason field to explain why the tool is blocked.

What MCP server provides get_gene_summary_by_geneid? +

get_gene_summary_by_geneid is provided by the Origene MCP server (gentel-lab/origenemcp). PolicyLayer sits as a proxy in front of this server to enforce policies before tool calls reach the server.

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