get_ld_pairwise

A read tool on the Origene MCP server.

SERVEROrigeneMCP SOURCEgentel-lab/origenemcp

Low RISK CLASS

Category Read

Parameters 00 required

Recommended Allowedsee the rule below

Registry record Grade C, identity unverified Pull the record →

This record as markdown: /tools/gentel-lab-origenemcp/get-ld-pairwise.md

WHAT IT DOES

What get_ld_pairwise does on OrigeneMCP

AI agents call get_ld_pairwise to retrieve information from OrigeneMCP without modifying anything. It is typically the context-gathering step in research, monitoring, and reporting workflows, before the agent takes action elsewhere.

RISK

Why get_ld_pairwise is rated Low

Linkage disequilibrium (LD) queries are standard informational biomedical operations that retrieve population genetic statistics. The absence of write, delete, or execution keywords, combined with the 'get_' naming convention and context of other read-heavy tools on this server (clinvar_query_*, depmap_get_*), indicates this retrieves or computes genetic correlation data without side effects.

From the tool's definition Tool name 'get_ld_pairwise' suggests linkage disequilibrium pairwise retrieval, a query operation on biomedical databases.

Attacks that exploit this kind of access

RECOMMENDED RULE

The rule that runs get_ld_pairwise safely

PolicyLayer is an MCP gateway: it sits between your AI agents and OrigeneMCP, and checks every tool call against a rule you set before the call runs. Nothing changes on the server itself. For get_ld_pairwise, this is the rule to start with:

get_ld_pairwise Allowed

get_ld_pairwise is read-only, so it stays allowed. Everything else on the server is denied unless you say otherwise.

View as policy code

policy.json

{
  "version": "1",
  "default": "deny",
  "tools": {
    "get_ld_pairwise": {}
  }
}

ALLOW ONLY THIS TOOL → Instant setup, no code required.

The button opens the PolicyLayer dashboard: create your workspace, connect OrigeneMCP, apply this rule, and every get_ld_pairwise call is checked against it from then on.

FAQ

Questions about get_ld_pairwise

What does the get_ld_pairwise tool do? +

get_ld_pairwise is a read tool on the Origene MCP server. It is categorised as a Read tool in the OrigeneMCP MCP Server, which means it retrieves data without modifying state.

How do I enforce a policy on get_ld_pairwise? +

Register the Origene MCP server in PolicyLayer and add a rule for get_ld_pairwise: allow, deny, rate-limit, or require approval. Point your MCP client at the PolicyLayer proxy URL and the rule is enforced on every call, before it reaches OrigeneMCP. Nothing to install.

What risk level is get_ld_pairwise? +

get_ld_pairwise is a Read tool with low risk. Read-only tools are generally safe to allow by default.

Can I rate-limit get_ld_pairwise? +

Yes. Add a rate_limit block to the get_ld_pairwise rule in your PolicyLayer policy. For example, setting max: 10 and window: 60 limits the tool to 10 calls per minute. Rate limits are tracked per agent session and reset automatically.

How do I block get_ld_pairwise completely? +

Set action: deny in the PolicyLayer policy for get_ld_pairwise. The AI agent will receive a policy violation error and cannot call the tool. You can also include a reason field to explain why the tool is blocked.

What MCP server provides get_ld_pairwise? +

get_ld_pairwise is provided by the Origene MCP server (gentel-lab/origenemcp). PolicyLayer sits as a proxy in front of this server to enforce policies before tool calls reach the server.

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