get_organism_id

A read tool on the Origene MCP server.

SERVEROrigeneMCP SOURCEgentel-lab/origenemcp

Low RISK CLASS

Category Read

Parameters 00 required

Recommended Allowedsee the rule below

Registry record Grade C, identity unverified Pull the record →

This record as markdown: /tools/gentel-lab-origenemcp/get-organism-id.md

WHAT IT DOES

What get_organism_id does on OrigeneMCP

AI agents call get_organism_id to retrieve information from OrigeneMCP without modifying anything. It is typically the context-gathering step in research, monitoring, and reporting workflows, before the agent takes action elsewhere.

RISK

Why get_organism_id is rated Low

The tool name prefix 'get_' and context within a biomedical research platform strongly suggest this is a lookup/retrieval operation that queries organism identifiers without modifying data. The lack of descriptive text slightly reduces confidence, but the consistent pattern of read-only tools in the sibling list supports classification as Read with low severity.

From the tool's definition Tool name 'get_organism_id' suggests retrieval of organism identifiers. No description provided, but naming pattern ('get_') and context among sibling tools (check_genome_accessions, clinvar_find_single_mutation, depmap_get_dependency) indicate data…

Attacks that exploit this kind of access

RECOMMENDED RULE

The rule that runs get_organism_id safely

PolicyLayer is an MCP gateway: it sits between your AI agents and OrigeneMCP, and checks every tool call against a rule you set before the call runs. Nothing changes on the server itself. For get_organism_id, this is the rule to start with:

get_organism_id Allowed

get_organism_id is read-only, so it stays allowed. Everything else on the server is denied unless you say otherwise.

View as policy code

policy.json

{
  "version": "1",
  "default": "deny",
  "tools": {
    "get_organism_id": {}
  }
}

ALLOW ONLY THIS TOOL → Instant setup, no code required.

The button opens the PolicyLayer dashboard: create your workspace, connect OrigeneMCP, apply this rule, and every get_organism_id call is checked against it from then on.

FAQ

Questions about get_organism_id

What does the get_organism_id tool do? +

get_organism_id is a read tool on the Origene MCP server. It is categorised as a Read tool in the OrigeneMCP MCP Server, which means it retrieves data without modifying state.

How do I enforce a policy on get_organism_id? +

Register the Origene MCP server in PolicyLayer and add a rule for get_organism_id: allow, deny, rate-limit, or require approval. Point your MCP client at the PolicyLayer proxy URL and the rule is enforced on every call, before it reaches OrigeneMCP. Nothing to install.

What risk level is get_organism_id? +

get_organism_id is a Read tool with low risk. Read-only tools are generally safe to allow by default.

Can I rate-limit get_organism_id? +

Yes. Add a rate_limit block to the get_organism_id rule in your PolicyLayer policy. For example, setting max: 10 and window: 60 limits the tool to 10 calls per minute. Rate limits are tracked per agent session and reset automatically.

How do I block get_organism_id completely? +

Set action: deny in the PolicyLayer policy for get_organism_id. The AI agent will receive a policy violation error and cannot call the tool. You can also include a reason field to explain why the tool is blocked.

What MCP server provides get_organism_id? +

get_organism_id is provided by the Origene MCP server (gentel-lab/origenemcp). PolicyLayer sits as a proxy in front of this server to enforce policies before tool calls reach the server.

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