get_phenotype_gene

A read tool on the Origene MCP server.

SERVEROrigeneMCP SOURCEgentel-lab/origenemcp

Low RISK CLASS

Category Read

Parameters 00 required

Recommended Allowedsee the rule below

Registry record Grade C, identity unverified Pull the record →

This record as markdown: /tools/gentel-lab-origenemcp/get-phenotype-gene.md

WHAT IT DOES

What get_phenotype_gene does on OrigeneMCP

AI agents call get_phenotype_gene to retrieve information from OrigeneMCP without modifying anything. It is typically the context-gathering step in research, monitoring, and reporting workflows, before the agent takes action elsewhere.

RISK

Why get_phenotype_gene is rated Low

Given the context of a biomedical research platform focused on information retrieval across genes and diseases, and the consistent naming pattern with other non-destructive query tools on the server, this tool almost certainly retrieves phenotype-gene association data without modifying or deleting resources.

From the tool's definition Tool name 'get_phenotype_gene' indicates data retrieval. The description is empty, but the naming pattern is consistent with sibling tools like 'depmap_get_dependency', 'depmap_get_expression', and 'clinvar_get_best_refseqid_by_sequence', all of which are…

Attacks that exploit this kind of access

RECOMMENDED RULE

The rule that runs get_phenotype_gene safely

PolicyLayer is an MCP gateway: it sits between your AI agents and OrigeneMCP, and checks every tool call against a rule you set before the call runs. Nothing changes on the server itself. For get_phenotype_gene, this is the rule to start with:

get_phenotype_gene Allowed

get_phenotype_gene is read-only, so it stays allowed. Everything else on the server is denied unless you say otherwise.

View as policy code

policy.json

{
  "version": "1",
  "default": "deny",
  "tools": {
    "get_phenotype_gene": {}
  }
}

ALLOW ONLY THIS TOOL → Instant setup, no code required.

The button opens the PolicyLayer dashboard: create your workspace, connect OrigeneMCP, apply this rule, and every get_phenotype_gene call is checked against it from then on.

FAQ

Questions about get_phenotype_gene

What does the get_phenotype_gene tool do? +

get_phenotype_gene is a read tool on the Origene MCP server. It is categorised as a Read tool in the OrigeneMCP MCP Server, which means it retrieves data without modifying state.

How do I enforce a policy on get_phenotype_gene? +

Register the Origene MCP server in PolicyLayer and add a rule for get_phenotype_gene: allow, deny, rate-limit, or require approval. Point your MCP client at the PolicyLayer proxy URL and the rule is enforced on every call, before it reaches OrigeneMCP. Nothing to install.

What risk level is get_phenotype_gene? +

get_phenotype_gene is a Read tool with low risk. Read-only tools are generally safe to allow by default.

Can I rate-limit get_phenotype_gene? +

Yes. Add a rate_limit block to the get_phenotype_gene rule in your PolicyLayer policy. For example, setting max: 10 and window: 60 limits the tool to 10 calls per minute. Rate limits are tracked per agent session and reset automatically.

How do I block get_phenotype_gene completely? +

Set action: deny in the PolicyLayer policy for get_phenotype_gene. The AI agent will receive a policy violation error and cannot call the tool. You can also include a reason field to explain why the tool is blocked.

What MCP server provides get_phenotype_gene? +

get_phenotype_gene is provided by the Origene MCP server (gentel-lab/origenemcp). PolicyLayer sits as a proxy in front of this server to enforce policies before tool calls reach the server.

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