Get assembly accessions for a sequence accession
AI agents call get_sequence_assemblies to retrieve information from OrigeneMCP without modifying anything — typically the context-gathering step in research, monitoring, and reporting workflows, before the agent takes action elsewhere.
This tool retrieves reference data from a biomedical database without modifying, executing operations on, or deleting anything. It is a straightforward read operation consistent with database lookups. The blast radius of misuse is minimal—an AI agent cannot harm systems or data through erroneous lookups.
From the tool's definition get_sequence_assemblies — a lookup tool that retrieves assembly accessions for a given sequence accession. The verb 'Get' and the retrieval-only nature (no modification, deletion, or execution) indicate a pure query operation.
Documented attack patterns abuse exactly the kind of access get_sequence_assemblies gives an agent:
PolicyLayer is an MCP gateway — it sits between your AI agents and OrigeneMCP, and nothing reaches the server without passing your rules. This is the rule we recommend for get_sequence_assemblies:
{
"version": "1",
"default": "deny",
"tools": {
"get_sequence_assemblies": {}
}
}get_sequence_assemblies is read-only, so it stays allowed — but everything else on the server is denied unless you say otherwise.
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Get assembly accessions for a sequence accession. It is categorised as a Read tool in the OrigeneMCP MCP Server, which means it retrieves data without modifying state.
Register the Origene MCP server in PolicyLayer and add a rule for get_sequence_assemblies: allow, deny, rate-limit, or require approval. Point your MCP client at the PolicyLayer proxy URL and the rule is enforced on every call, before it reaches OrigeneMCP. Nothing to install.
get_sequence_assemblies is a Read tool with low risk. Read-only tools are generally safe to allow by default.
Yes. Add a rate_limit block to the get_sequence_assemblies rule in your PolicyLayer policy. For example, setting max: 10 and window: 60 limits the tool to 10 calls per minute. Rate limits are tracked per agent session and reset automatically.
Set action: deny in the PolicyLayer policy for get_sequence_assemblies. The AI agent will receive a policy violation error and cannot call the tool. You can also include a reason field to explain why the tool is blocked.
get_sequence_assemblies is provided by the Origene MCP server (gentel-lab/origenemcp). PolicyLayer sits as a proxy in front of this server to enforce policies before tool calls reach the server.
Start from OrigeneMCP, add the rest of your stack, and see everything your agents can call. Then put policy on all of it.
Free to start. No card required.
439 OrigeneMCP tools catalogued and risk-classified — across an index of 43,000+ MCP servers.