get_similarity_scores_of_the_protein_set
A read tool on the Origene MCP server.
This record as markdown: /tools/gentel-lab-origenemcp/get-similarity-scores-of-the-protein-set.md
What get_similarity_scores_of_the_protein_set does on OrigeneMCP
AI agents call get_similarity_scores_of_the_protein_set to retrieve information from OrigeneMCP without modifying anything. It is typically the context-gathering step in research, monitoring, and reporting workflows, before the agent takes action elsewhere.
Why get_similarity_scores_of_the_protein_set is rated Low
The tool appears to retrieve or compute similarity scores for a protein dataset, a typical analytical query operation. Given the biomedical research context (alongside clinvar, depmap, and genome analysis tools), this likely performs comparative analysis on protein data. The empty description reduces confidence slightly, but the name strongly suggests a read operation returning results without side effects.
From the tool's definition Tool name 'get_similarity_scores_of_the_protein_set' indicates retrieval of pre-computed similarity metrics without modification of underlying data. Absence of verbs like 'create', 'update', 'delete', 'execute', or 'run' suggests read-only operation.
Attacks that exploit this kind of access
The rule that runs get_similarity_scores_of_the_protein_set safely
PolicyLayer is an MCP gateway: it sits between your AI agents and OrigeneMCP, and checks every tool call against a rule you set before the call runs. Nothing changes on the server itself. For get_similarity_scores_of_the_protein_set, this is the rule to start with:
get_similarity_scores_of_the_protein_set is read-only, so it stays allowed. Everything else on the server is denied unless you say otherwise.
The button opens the PolicyLayer dashboard: create your workspace, connect OrigeneMCP, apply this rule, and every get_similarity_scores_of_the_protein_set call is checked against it from then on.
Questions about get_similarity_scores_of_the_protein_set
get_similarity_scores_of_the_protein_set is a read tool on the Origene MCP server. It is categorised as a Read tool in the OrigeneMCP MCP Server, which means it retrieves data without modifying state.
Register the Origene MCP server in PolicyLayer and add a rule for get_similarity_scores_of_the_protein_set: allow, deny, rate-limit, or require approval. Point your MCP client at the PolicyLayer proxy URL and the rule is enforced on every call, before it reaches OrigeneMCP. Nothing to install.
get_similarity_scores_of_the_protein_set is a Read tool with low risk. Read-only tools are generally safe to allow by default.
Yes. Add a rate_limit block to the get_similarity_scores_of_the_protein_set rule in your PolicyLayer policy. For example, setting max: 10 and window: 60 limits the tool to 10 calls per minute. Rate limits are tracked per agent session and reset automatically.
Set action: deny in the PolicyLayer policy for get_similarity_scores_of_the_protein_set. The AI agent will receive a policy violation error and cannot call the tool. You can also include a reason field to explain why the tool is blocked.
get_similarity_scores_of_the_protein_set is provided by the Origene MCP server (gentel-lab/origenemcp). PolicyLayer sits as a proxy in front of this server to enforce policies before tool calls reach the server.
More on Origene, and thousands of servers like it.
This server
Across the catalogue