get_similarity_scores_of_the_protein_set
AI agents call get_similarity_scores_of_the_protein_set to retrieve information from OrigeneMCP without modifying anything — typically the context-gathering step in research, monitoring, and reporting workflows, before the agent takes action elsewhere.
The tool appears to retrieve or compute similarity scores for a protein dataset, a typical analytical query operation. Given the biomedical research context (alongside clinvar, depmap, and genome analysis tools), this likely performs comparative analysis on protein data. The empty description reduces confidence slightly, but the name strongly suggests a read operation returning results without side effects.
From the tool's definition Tool name 'get_similarity_scores_of_the_protein_set' indicates retrieval of pre-computed similarity metrics without modification of underlying data. Absence of verbs like 'create', 'update', 'delete', 'execute', or 'run' suggests read-only operation.
Documented attack patterns abuse exactly the kind of access get_similarity_scores_of_the_protein_set gives an agent:
PolicyLayer is an MCP gateway — it sits between your AI agents and OrigeneMCP, and nothing reaches the server without passing your rules. This is the rule we recommend for get_similarity_scores_of_the_protein_set:
{
"version": "1",
"default": "deny",
"tools": {
"get_similarity_scores_of_the_protein_set": {}
}
}get_similarity_scores_of_the_protein_set is read-only, so it stays allowed — but everything else on the server is denied unless you say otherwise.
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get_similarity_scores_of_the_protein_set. It is categorised as a Read tool in the OrigeneMCP MCP Server, which means it retrieves data without modifying state.
Register the Origene MCP server in PolicyLayer and add a rule for get_similarity_scores_of_the_protein_set: allow, deny, rate-limit, or require approval. Point your MCP client at the PolicyLayer proxy URL and the rule is enforced on every call, before it reaches OrigeneMCP. Nothing to install.
get_similarity_scores_of_the_protein_set is a Read tool with low risk. Read-only tools are generally safe to allow by default.
Yes. Add a rate_limit block to the get_similarity_scores_of_the_protein_set rule in your PolicyLayer policy. For example, setting max: 10 and window: 60 limits the tool to 10 calls per minute. Rate limits are tracked per agent session and reset automatically.
Set action: deny in the PolicyLayer policy for get_similarity_scores_of_the_protein_set. The AI agent will receive a policy violation error and cannot call the tool. You can also include a reason field to explain why the tool is blocked.
get_similarity_scores_of_the_protein_set is provided by the Origene MCP server (gentel-lab/origenemcp). PolicyLayer sits as a proxy in front of this server to enforce policies before tool calls reach the server.
Start from OrigeneMCP, add the rest of your stack, and see everything your agents can call. Then put policy on all of it.
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