get_uniparc_cross_references_by_upi
AI agents call get_uniparc_cross_references_by_upi to retrieve information from OrigeneMCP without modifying anything — typically the context-gathering step in research, monitoring, and reporting workflows, before the agent takes action elsewhere.
This tool queries and retrieves cross-reference data from UniParc—a standard biomedical database lookup with no side effects, no code execution, and no data modification capability. The empty description slightly reduces confidence, but the naming convention and server context (biomedical research tools) strongly indicate a simple data retrieval function for molecular research.
From the tool's definition Tool name 'get_uniparc_cross_references_by_upi' indicates a retrieval operation ('get') on UniParc data (a protein sequence database), returning cross-references indexed by UPI (UniProt Identifier).
Documented attack patterns abuse exactly the kind of access get_uniparc_cross_references_by_upi gives an agent:
PolicyLayer is an MCP gateway — it sits between your AI agents and OrigeneMCP, and nothing reaches the server without passing your rules. This is the rule we recommend for get_uniparc_cross_references_by_upi:
{
"version": "1",
"default": "deny",
"tools": {
"get_uniparc_cross_references_by_upi": {}
}
}get_uniparc_cross_references_by_upi is read-only, so it stays allowed — but everything else on the server is denied unless you say otherwise.
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get_uniparc_cross_references_by_upi. It is categorised as a Read tool in the OrigeneMCP MCP Server, which means it retrieves data without modifying state.
Register the Origene MCP server in PolicyLayer and add a rule for get_uniparc_cross_references_by_upi: allow, deny, rate-limit, or require approval. Point your MCP client at the PolicyLayer proxy URL and the rule is enforced on every call, before it reaches OrigeneMCP. Nothing to install.
get_uniparc_cross_references_by_upi is a Read tool with low risk. Read-only tools are generally safe to allow by default.
Yes. Add a rate_limit block to the get_uniparc_cross_references_by_upi rule in your PolicyLayer policy. For example, setting max: 10 and window: 60 limits the tool to 10 calls per minute. Rate limits are tracked per agent session and reset automatically.
Set action: deny in the PolicyLayer policy for get_uniparc_cross_references_by_upi. The AI agent will receive a policy violation error and cannot call the tool. You can also include a reason field to explain why the tool is blocked.
get_uniparc_cross_references_by_upi is provided by the Origene MCP server (gentel-lab/origenemcp). PolicyLayer sits as a proxy in front of this server to enforce policies before tool calls reach the server.
Start from OrigeneMCP, add the rest of your stack, and see everything your agents can call. Then put policy on all of it.
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