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pdb_get_pdb_cluster_data_aggregation

A read tool on the Origene MCP server.

SERVEROrigeneMCP SOURCEgentel-lab/origenemcp
Low RISK CLASS
Category Read
Parameters 00 required
Recommended Allowedsee the rule below
Registry record Grade C, identity unverified Pull the record →

This record as markdown: /tools/gentel-lab-origenemcp/pdb-get-pdb-cluster-data-aggregation.md

What pdb_get_pdb_cluster_data_aggregation does on OrigeneMCP

AI agents call pdb_get_pdb_cluster_data_aggregation to retrieve information from OrigeneMCP without modifying anything. It is typically the context-gathering step in research, monitoring, and reporting workflows, before the agent takes action elsewhere.

Why pdb_get_pdb_cluster_data_aggregation is rated Low

Despite the empty description lowering confidence slightly, the naming convention and context of a biomedical research platform indicate this tool retrieves and aggregates existing protein structure cluster metadata without modifying, deleting, or executing code. No financial, destructive, or execute-type side effects are evident. This is a read operation with minimal blast radius if misused by an AI agent.

From the tool's definition Tool name 'pdb_get_pdb_cluster_data_aggregation' suggests retrieval of pre-computed protein structure cluster data from the Protein Data Bank. The 'get' prefix and 'data_aggregation' (compilation of existing data) indicate a read-only query operation.

Questions about pdb_get_pdb_cluster_data_aggregation

What does the pdb_get_pdb_cluster_data_aggregation tool do? +

pdb_get_pdb_cluster_data_aggregation is a read tool on the Origene MCP server. It is categorised as a Read tool in the OrigeneMCP MCP Server, which means it retrieves data without modifying state.

How do I enforce a policy on pdb_get_pdb_cluster_data_aggregation? +

Register the Origene MCP server in PolicyLayer and add a rule for pdb_get_pdb_cluster_data_aggregation: allow, deny, rate-limit, or require approval. Point your MCP client at the PolicyLayer proxy URL and the rule is enforced on every call, before it reaches OrigeneMCP. Nothing to install.

What risk level is pdb_get_pdb_cluster_data_aggregation? +

pdb_get_pdb_cluster_data_aggregation is a Read tool with low risk. Read-only tools are generally safe to allow by default.

Can I rate-limit pdb_get_pdb_cluster_data_aggregation? +

Yes. Add a rate_limit block to the pdb_get_pdb_cluster_data_aggregation rule in your PolicyLayer policy. For example, setting max: 10 and window: 60 limits the tool to 10 calls per minute. Rate limits are tracked per agent session and reset automatically.

How do I block pdb_get_pdb_cluster_data_aggregation completely? +

Set action: deny in the PolicyLayer policy for pdb_get_pdb_cluster_data_aggregation. The AI agent will receive a policy violation error and cannot call the tool. You can also include a reason field to explain why the tool is blocked.

What MCP server provides pdb_get_pdb_cluster_data_aggregation? +

pdb_get_pdb_cluster_data_aggregation is provided by the Origene MCP server (gentel-lab/origenemcp). PolicyLayer sits as a proxy in front of this server to enforce policies before tool calls reach the server.

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