// SCAN REPORT

Pypi:uniprot

41 tools. 6 can modify or destroy data without limits.

6 write tools that can modify data. Rate limits recommended.

Last updated: 29 Jun 2026

6 can modify or destroy data

35 read-only

41 tools total

Community server · catalogue entry verified 29/06/2026

How to control Pypi:uniprot ↓

TOOL MAP

What Pypi:uniprot exposes to your agents

Read (35) Write / Execute (6) Destructive / Financial (0)

Running more than one server? Check your whole stack →

MOST DANGEROUS TOOLS

High Risk

The most dangerous Pypi:uniprot tools

Write · Medium uniprot_resolve_pdb List every PDB structure cross-referenced from a UniProt entry, with Write · Medium uniprot_resolve_alphafold Resolve the AlphaFoldDB cross-reference for a UniProt entry — typically Write · Medium uniprot_resolve_chembl Resolve ChEMBL drug-target cross-references for a UniProt entry. Write · Medium uniprot_resolve_clinvar uniprot_resolve_clinvar

6 of Pypi:uniprot's 41 tools can modify, destroy, or commit something on every call — and an agent calls them with no built-in limits.

POLICY

How to control Pypi:uniprot

PolicyLayer is an MCP gateway — it sits between your AI agents and Pypi:uniprot, and nothing reaches the server without passing your rules. These are the rules we recommend:

Rate limit write operations

{
  "uniprot_resolve_alphafold": {
    "limits": [
      {
        "counter": "uniprot_resolve_alphafold_per_hour",
        "window": "hour",
        "max": 30,
        "scope": "grant"
      }
    ]
  }
}

Prevents bulk unintended modifications from agents caught in loops.

Cap read operations

{
  "uniprot_batch_entries": {
    "limits": [
      {
        "counter": "uniprot_batch_entries_per_minute",
        "window": "minute",
        "max": 60,
        "scope": "grant"
      }
    ]
  }
}

Controls API costs and prevents retry loops from exhausting upstream rate limits.

Create a free account and register Pypi:uniprot — nothing to install.
Add these rules — paste them, or build them visually. Tune the limits to your setup.
Point your MCP client (Claude, Cursor, anything) at your gateway URL.

ENFORCE POLICY ON PYPI:UNIPROT →

Instant setup, no code required.

FULL CATALOGUE

All 41 Pypi:uniprot tools

WRITE 6 tools

Write uniprot_resolve_alphafold Resolve the AlphaFoldDB cross-reference for a UniProt entry — typically Write uniprot_resolve_chembl Resolve ChEMBL drug-target cross-references for a UniProt entry. Write uniprot_resolve_clinvar uniprot_resolve_clinvar Write uniprot_resolve_interpro List InterPro signatures (domain / family classifications) for a Write uniprot_resolve_orthology uniprot_resolve_orthology Write uniprot_resolve_pdb List every PDB structure cross-referenced from a UniProt entry, with

READ 35 tools

Read uniprot_batch_entries Fetch multiple entries. accessions=comma-separated UniProt IDs (first 100 fetched). Read uniprot_compute_properties uniprot_compute_properties Read uniprot_features_at_position uniprot_features_at_position Read uniprot_get_active_sites uniprot_get_active_sites Read uniprot_get_alphafold_confidence uniprot_get_alphafold_confidence Read uniprot_get_citation Fetch a UniProt citation record by ID (typically a PubMed ID, e.g. 9840937). Read uniprot_get_cross_refs Get cross-references to PDB, Pfam, ENSEMBL, Reactome, KEGG, STRING, etc. Optional database filter. Read uniprot_get_disease_associations uniprot_get_disease_associations Read uniprot_get_entry Fetch a UniProt protein entry by accession (e.g. P04637 for p53, P38398 for BRCA1). Read uniprot_get_evidence_summary uniprot_get_evidence_summary Read uniprot_get_features Get protein features: domains, binding sites, PTMs, signal peptides. Read uniprot_get_go_terms Get GO annotations grouped by aspect. Optional filter: 'F' (function), 'P' (process), 'C' (component). Read uniprot_get_keyword Fetch a UniProt keyword by ID (e.g. KW-0007 for Acetylation, KW-0539 for Nucleus). Read uniprot_get_processing_features uniprot_get_processing_features Read uniprot_get_proteome Fetch a UniProt proteome by UP ID (e.g. UP000005640 = human reference). Read uniprot_get_ptms uniprot_get_ptms Read uniprot_get_publications uniprot_get_publications Read uniprot_get_sequence Get protein sequence in FASTA format for a UniProt accession. Read uniprot_get_subcellular_location Fetch a UniProt subcellular-location term by ID (e.g. SL-0039 Cell membrane, SL-0086 Cytoplasm, SL-0191 Nucleu Read uniprot_get_uniparc uniprot_get_uniparc Read uniprot_get_uniref Fetch a UniRef cluster by ID. Examples: Read uniprot_get_variants Get known natural variants and disease mutations for a protein. Read uniprot_id_mapping Map between ID types. ids=comma-separated. Common db codes: UniProtKB_AC-ID, PDB, Ensembl, GeneID, Gene_Name. Read uniprot_lookup_variant uniprot_lookup_variant Read uniprot_provenance_verify uniprot_provenance_verify Read uniprot_replay_from_cache uniprot_replay_from_cache Read uniprot_search Search UniProtKB. Examples: '(gene:TP53) AND (organism_id:9606)', 'kinase AND reviewed:true'. Read uniprot_search_citations Search the UniProt citations index. Examples: 'p53 AND author:Vogelstein', Read uniprot_search_keywords Search UniProt's controlled keyword vocabulary by name or definition. Read uniprot_search_proteomes Search UniProt proteomes. Examples: 'organism_id:9606' for human, Read uniprot_search_subcellular_locations Search UniProt's controlled subcellular-location vocabulary. Read uniprot_search_uniparc Search UniParc. Examples: 'taxonomy_id:9606' for human sequences, Read uniprot_search_uniref Search UniRef clusters. identity_tier filters by % identity: Read uniprot_target_dossier uniprot_target_dossier Read uniprot_taxonomy_search Search UniProt taxonomy by organism name. Returns taxonomy IDs.

FAQ

Questions about Pypi:uniprot

How do I prevent bulk modifications through Pypi:uniprot? +

The Pypi:uniprot server has 6 write tools including uniprot_resolve_alphafold, uniprot_resolve_chembl, uniprot_resolve_clinvar. Set a rate limit in your policy -- for example, 10 calls per hour prevents an agent from making more than 10 modifications per hour. PolicyLayer enforces this at the gateway, before calls reach Pypi:uniprot.

How many tools does the Pypi:uniprot MCP server expose? +

41 tools across 2 categories: Read, Write. 35 are read-only. 6 can modify, create, or delete data.

How do I enforce a policy on Pypi:uniprot? +

Register the Pypi:uniprot MCP server in PolicyLayer, apply the suggested rules above (adjust the limits to your use case), and point your AI client at the PolicyLayer proxy URL instead of the server directly. Your agents keep the same tools; PolicyLayer evaluates every call against policy before it executes. Nothing to install, live in minutes.

Enforce policy on every Pypi:uniprot tool call.

Deterministic rules across all 41 Pypi:uniprot tools. Per-identity grants. Full audit log. Live in minutes. Nothing to install.

ENFORCE POLICY ON PYPI:UNIPROT →

Instant setup, no code required.

41 Pypi:uniprot tools catalogued and risk-classified — across an index of 43,000+ MCP servers.