AI agents call clear_settings to permanently remove resources in Code Index — typically in cleanup and lifecycle workflows. It does its job in a single call, and there is no undo.
The tool explicitly clears settings and cached data, which is an irreversible operation that destroys existing configuration state. This qualifies as Destructive rather than Write because the action cannot be reversed through normal operations. While the blast radius may be limited to the server's own state (high rather than critical), the operation is fundamentally destructive.
From the tool's definition Tool name 'clear_settings' combined with description 'Clear all settings and cached data' indicates irreversible deletion of configuration and cached state. This cannot be undone without manual reconfiguration.
Risk signalsBulk/mass operation — affects multiple targets
Documented attack patterns abuse exactly the kind of access clear_settings gives an agent:
PolicyLayer is an MCP gateway — it sits between your AI agents and Code Index, and nothing reaches the server without passing your rules. This is the rule we recommend for clear_settings:
{
"version": "1",
"default": "deny",
"hide": [
"clear_settings"
]
} clear_settings disappears from the agent's tool list entirely, and any attempt to call it is denied. The rest of the server keeps working.
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Clear all settings and cached data. It is categorised as a Destructive tool in the Code Index MCP Server, which means it can permanently delete or destroy data. Block by default and require explicit approval.
Register the Code Index MCP server in PolicyLayer and add a rule for clear_settings: allow, deny, rate-limit, or require approval. Point your MCP client at the PolicyLayer proxy URL and the rule is enforced on every call, before it reaches Code Index. Nothing to install.
clear_settings is a Destructive tool with critical risk. Critical-risk tools should be blocked by default and only enabled with explicit human approval.
Yes. Add a rate_limit block to the clear_settings rule in your PolicyLayer policy. For example, setting max: 10 and window: 60 limits the tool to 10 calls per minute. Rate limits are tracked per agent session and reset automatically.
Set action: deny in the PolicyLayer policy for clear_settings. The AI agent will receive a policy violation error and cannot call the tool. You can also include a reason field to explain why the tool is blocked.
clear_settings is provided by the Code Index MCP server (johnhuang316/code-index-mcp). PolicyLayer sits as a proxy in front of this server to enforce policies before tool calls reach the server.
Start from Code Index, add the rest of your stack, and see everything your agents can call. Then put policy on all of it.
Free to start. No card required.
14 Code Index tools catalogued and risk-classified — across an index of 43,000+ MCP servers.