get_variant_frequency

get_variant_frequency

Server Pgx julius-schmidt/mcp-pharmacogenomics
Category Read
Risk class Low
Parameters 00 required

What get_variant_frequency does on Pgx

AI agents call get_variant_frequency to retrieve information from Pgx without modifying anything — typically the context-gathering step in research, monitoring, and reporting workflows, before the agent takes action elsewhere.

Why get_variant_frequency needs a policy

This tool retrieves population genetics data about variant frequencies—a read-only lookup with no side effects. The 'get_' prefix and pharmacogenomics context confirm it queries existing data. Even if misused by an AI agent, it cannot modify, delete, or execute arbitrary operations; it only returns informational statistics used for clinical decision-support.

From the tool's definition Tool name 'get_variant_frequency' indicates a retrieval operation; sibling tools on this pharmacogenomics server are all read-only queries (lookup_variant_clinvar, get_dosing_guideline, search_gene_variants_clinvar, etc.).

Questions about get_variant_frequency

What does the get_variant_frequency tool do? +

get_variant_frequency. It is categorised as a Read tool in the Pgx MCP Server, which means it retrieves data without modifying state.

How do I enforce a policy on get_variant_frequency? +

Register the Pgx MCP server in PolicyLayer and add a rule for get_variant_frequency: allow, deny, rate-limit, or require approval. Point your MCP client at the PolicyLayer proxy URL and the rule is enforced on every call, before it reaches Pgx. Nothing to install.

What risk level is get_variant_frequency? +

get_variant_frequency is a Read tool with low risk. Read-only tools are generally safe to allow by default.

Can I rate-limit get_variant_frequency? +

Yes. Add a rate_limit block to the get_variant_frequency rule in your PolicyLayer policy. For example, setting max: 10 and window: 60 limits the tool to 10 calls per minute. Rate limits are tracked per agent session and reset automatically.

How do I block get_variant_frequency completely? +

Set action: deny in the PolicyLayer policy for get_variant_frequency. The AI agent will receive a policy violation error and cannot call the tool. You can also include a reason field to explain why the tool is blocked.

What MCP server provides get_variant_frequency? +

get_variant_frequency is provided by the Pgx MCP server (julius-schmidt/mcp-pharmacogenomics). PolicyLayer sits as a proxy in front of this server to enforce policies before tool calls reach the server.

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