// MCP SERVER RECORD

ChimeraX MCP Server

Unverified
REPOmahynotch/chimerax-mcp
FRisk gradecritical blast radius
Catalogue entry updated 7 days ago
Auth postureNot probedno remote endpoint probed yet
Tools392 Destructive · 10 Execute · 16 Write · 11 Read
Worst categoryDestructivegrade tracks the peak, not the average
Capability mix
Destructive 2Execute 10Write 16Read 11
What it can reach
Ingests untrusted inputTouches secretsReaches networkRuns codeTouches filesChanges permissionsSends external commsPersistsDeletes dataMoves money
Tools 39
clear_labelsDestructiveMediumdelete_atomsDestructiveHighalign_and_rmsdExecuteMediuminvert_selectionExecuteMediumminimize_energyExecuteHigh
View all 39 tools
mutate_residueExecuteHighreset_viewExecuteLowrun_scriptExecuteHighshow_electrostatic_surfaceExecuteMediumshow_hydrophobicity_surfaceExecuteMediumspinExecuteLowstart_recordingExecuteLowadd_hydrogenWriteMediumclose_structureWriteLowcolor_structureWriteMediumhide_atomsWriteLowhide_surfaceWriteLowlabel_residuesWriteMediumname_selectionWriteLowrecord_spinWriteMediumsave_structureWriteMediumselect_atomsWriteMediumselect_chainWriteMediumset_backgroundWriteLowshow_cartoonWriteLowstop_recordingWriteMediumtake_snapshotWriteLowzoom_toWriteMediumfind_contactsReadLowget_bfactorsReadLowget_sequenceReadLowlist_modelsReadLowmeasure_angleReadLowmeasure_buried_areaReadLowmeasure_distanceReadLowopen_structureReadLowselect_nearReadLowshow_sticksReadLowshow_surfaceReadLow
Change history
No changes recorded since first scan. Watched servers surface a diff within the hour.
Recommended policy
clear_labelsdeny
align_and_rmsdrequire approval
add_hydrogenrate limit
Read-only toolsallow
Full policy breakdown with enforcement rules →
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