calculate_prs

Calculate Polygenic Risk Scores (PRS) for individuals using GWAS summary statistics and target genotypes.

Server Gwas muslus/gwas-mcp
Category Read
Risk class Low
Parameters 00 required

What calculate_prs does on Gwas

AI agents call calculate_prs to retrieve information from Gwas without modifying anything — typically the context-gathering step in research, monitoring, and reporting workflows, before the agent takes action elsewhere.

Why calculate_prs needs a policy

PRS calculation is a standard bioinformatics analysis that retrieves and processes existing data to produce computed results. It does not create, modify, delete data, execute arbitrary code, move funds, or trigger irreversible actions. The output is a calculated score, not a state change. The tool sits alongside other analytical functions (pca, heritability, inflation) all of which are computational reads.

From the tool's definition calculate_prs computes derived metrics (Polygenic Risk Scores) from GWAS summary statistics and target genotypes—a read-only analytical operation that performs calculations without modifying data or triggering external side effects.

Questions about calculate_prs

What does the calculate_prs tool do? +

Calculate Polygenic Risk Scores (PRS) for individuals using GWAS summary statistics and target genotypes. It is categorised as a Read tool in the Gwas MCP Server, which means it retrieves data without modifying state.

How do I enforce a policy on calculate_prs? +

Register the Gwas MCP server in PolicyLayer and add a rule for calculate_prs: allow, deny, rate-limit, or require approval. Point your MCP client at the PolicyLayer proxy URL and the rule is enforced on every call, before it reaches Gwas. Nothing to install.

What risk level is calculate_prs? +

calculate_prs is a Read tool with low risk. Read-only tools are generally safe to allow by default.

Can I rate-limit calculate_prs? +

Yes. Add a rate_limit block to the calculate_prs rule in your PolicyLayer policy. For example, setting max: 10 and window: 60 limits the tool to 10 calls per minute. Rate limits are tracked per agent session and reset automatically.

How do I block calculate_prs completely? +

Set action: deny in the PolicyLayer policy for calculate_prs. The AI agent will receive a policy violation error and cannot call the tool. You can also include a reason field to explain why the tool is blocked.

What MCP server provides calculate_prs? +

calculate_prs is provided by the Gwas MCP server (muslus/gwas-mcp). PolicyLayer sits as a proxy in front of this server to enforce policies before tool calls reach the server.

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