create_pca_plot

Create a PCA scatter plot showing population structure. Plots PC1 vs PC2.

Server Gwas muslus/gwas-mcp
Category Read
Risk class Low
Parameters 00 required

What create_pca_plot does on Gwas

AI agents call create_pca_plot to retrieve information from Gwas without modifying anything — typically the context-gathering step in research, monitoring, and reporting workflows, before the agent takes action elsewhere.

Why create_pca_plot needs a policy

This tool generates a visualization (scatter plot) from existing PCA data. It reads/renders data into a plot without modifying, deleting, or executing arbitrary operations. Creating a static chart is essentially a read/display operation with minimal blast radius if misused.

From the tool's definition Create a PCA scatter plot showing population structure. Plots PC1 vs PC2.

Questions about create_pca_plot

What does the create_pca_plot tool do? +

Create a PCA scatter plot showing population structure. Plots PC1 vs PC2. It is categorised as a Read tool in the Gwas MCP Server, which means it retrieves data without modifying state.

How do I enforce a policy on create_pca_plot? +

Register the Gwas MCP server in PolicyLayer and add a rule for create_pca_plot: allow, deny, rate-limit, or require approval. Point your MCP client at the PolicyLayer proxy URL and the rule is enforced on every call, before it reaches Gwas. Nothing to install.

What risk level is create_pca_plot? +

create_pca_plot is a Read tool with low risk. Read-only tools are generally safe to allow by default.

Can I rate-limit create_pca_plot? +

Yes. Add a rate_limit block to the create_pca_plot rule in your PolicyLayer policy. For example, setting max: 10 and window: 60 limits the tool to 10 calls per minute. Rate limits are tracked per agent session and reset automatically.

How do I block create_pca_plot completely? +

Set action: deny in the PolicyLayer policy for create_pca_plot. The AI agent will receive a policy violation error and cannot call the tool. You can also include a reason field to explain why the tool is blocked.

What MCP server provides create_pca_plot? +

create_pca_plot is provided by the Gwas MCP server (muslus/gwas-mcp). PolicyLayer sits as a proxy in front of this server to enforce policies before tool calls reach the server.

// LOOK UP ANOTHER SERVER

Every MCP server has a record like this.

Type a name, get the same breakdown: verified identity, auth posture, risk grade, capabilities, recommended policy.

Teams ship this data inside their own products. See what a licence covers →

// GET IN TOUCH

Have a question or want to learn more? Send us a message.

Message sent.

We'll get back to you soon.