find_orthologs

Find orthologous genes across species. Returns homologs from all Alliance model organisms.

Server AGR MCP Server nuin/agr-mcp-server-js
Category Read
Risk class Low
Parameters 00 required

What find_orthologs does on AGR MCP Server

AI agents call find_orthologs to retrieve information from AGR MCP Server without modifying anything — typically the context-gathering step in research, monitoring, and reporting workflows, before the agent takes action elsewhere.

Why find_orthologs needs a policy

This tool queries and retrieves genomic reference data (orthologous gene relationships) from the Alliance of Genome Resources without creating, modifying, deleting, or executing code/commands. It is a straightforward lookup/search operation with no side effects, placing it squarely in the Read category.

From the tool's definition Tool name 'find_orthologs' and description 'Find orthologous genes across species. Returns homologs from all Alliance model organisms' indicate data retrieval with no modification, deletion, or execution of external operations.

Questions about find_orthologs

What does the find_orthologs tool do? +

Find orthologous genes across species. Returns homologs from all Alliance model organisms. It is categorised as a Read tool in the AGR MCP Server MCP Server, which means it retrieves data without modifying state.

How do I enforce a policy on find_orthologs? +

Register the AGR MCP Server MCP server in PolicyLayer and add a rule for find_orthologs: allow, deny, rate-limit, or require approval. Point your MCP client at the PolicyLayer proxy URL and the rule is enforced on every call, before it reaches AGR MCP Server. Nothing to install.

What risk level is find_orthologs? +

find_orthologs is a Read tool with low risk. Read-only tools are generally safe to allow by default.

Can I rate-limit find_orthologs? +

Yes. Add a rate_limit block to the find_orthologs rule in your PolicyLayer policy. For example, setting max: 10 and window: 60 limits the tool to 10 calls per minute. Rate limits are tracked per agent session and reset automatically.

How do I block find_orthologs completely? +

Set action: deny in the PolicyLayer policy for find_orthologs. The AI agent will receive a policy violation error and cannot call the tool. You can also include a reason field to explain why the tool is blocked.

What MCP server provides find_orthologs? +

find_orthologs is provided by the AGR MCP Server MCP server (nuin/agr-mcp-server-js). PolicyLayer sits as a proxy in front of this server to enforce policies before tool calls reach the server.

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