ALPHAFOLD SOVEREIGN MCP TOOLS

54 tools from the AlphaFold Sovereign MCP MCP Server, categorised by risk level.

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// ALL 54 ALPHAFOLD SOVEREIGN MCP TOOLS

READ 50 tools

Read analyze_structural_confidence analyze_structural_confidence Read assess_target_druggability assess_target_druggability Read batch_go_lookup batch_go_lookup Read batch_protein_analysis batch_protein_analysis Read batch_structures batch_structures Read check_availability check_availability Read classify_variant_acmg classify_variant_acmg Read compare_disease_target_overlap compare_disease_target_overlap Read compare_protein_topology compare_protein_topology Read compare_proteins_topologically compare_proteins_topologically Read compute_information_content Compute Information Content (IC) for GO terms using corpus frequencies. Read compute_semantic_similarity compute_semantic_similarity Read compute_topology_fingerprint compute_topology_fingerprint Read detect_domains detect_domains Read detect_intrinsically_disordered detect_intrinsically_disordered Read extract_pae_matrix extract_pae_matrix Read filter_by_organism filter_by_organism Read find_drug_gene_network find_drug_gene_network Read find_drug_repurposing_candidates find_drug_repurposing_candidates Read find_evolutionary_structural_shifts find_evolutionary_structural_shifts Read find_similar_proteins find_similar_proteins Read get_advanced_topology get_advanced_topology Read get_cache_statistics Get statistics about the local structure cache. Read get_common_disease_targets get_common_disease_targets Read get_disease_targets get_disease_targets Read get_domain_annotations get_domain_annotations Read get_enriched_protein get_enriched_protein Read get_features get_features Read get_gene_phenotype_profile get_gene_phenotype_profile Read get_go_hierarchy get_go_hierarchy Read get_knowledge_graph_stats Return statistics about the local knowledge graph. Read get_orphan_disease_atlas get_orphan_disease_atlas Read get_plddt_profile Get detailed per-residue pLDDT confidence profile. Read get_protein_families get_protein_families Read get_structure get_structure Read get_target_diseases get_target_diseases Read get_topology get_topology Read lookup_disease lookup_disease Read lookup_phenotype lookup_phenotype Read map_disease_drug_landscape map_disease_drug_landscape Read phenotype_to_structures phenotype_to_structures Read predict_disorder Predict intrinsically disordered regions (IDRs) from pLDDT scores. Read query_protein_database query_protein_database Read query_variant_database query_variant_database Read score_binding_pocket_geometry score_binding_pocket_geometry Read search_by_go_term search_by_go_term Read search_diseases search_diseases Read search_structures search_structures Read synthesize_protein_dossier synthesize_protein_dossier Read triage_variant_3d triage_variant_3d

WRITE 4 tools

Write export_protein_set export_protein_set Write export_research_dataset export_research_dataset Write generate_variant_clinical_report generate_variant_clinical_report Write resolve_icd10_to_mondo resolve_icd10_to_mondo

// FAQ

How many tools does the AlphaFold Sovereign MCP MCP server have? +

The AlphaFold Sovereign MCP MCP server exposes 54 tools across 2 categories: Read, Write.

How do I enforce policies on AlphaFold Sovereign MCP tools? +

Route the AlphaFold Sovereign MCP server through the PolicyLayer gateway. Define allow, deny, or approval rules per tool in the dashboard; they are enforced on every call before it reaches the server.

What risk categories do AlphaFold Sovereign MCP tools fall into? +

AlphaFold Sovereign MCP tools are categorised as Read (50), Write (4). Each category has a recommended default policy.

Enforce policy on every AlphaFold Sovereign MCP tool call.

Start from AlphaFold Sovereign MCP, add the rest of your stack, and see everything your agents can call. Then put policy on all of it.

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