// MCP TOOL REFERENCE

PUBMED SEARCH TOOLS

63 tools from the Pubmed Search MCP Server, categorised by risk level.

// ALL 63 PUBMED SEARCH TOOLS

READ 53 tools

Read build_citation_tree build_citation_tree Read build_research_timeline build_research_timeline Read parse_pico parse_pico Read analyze_clinical_question Return an agent-guided PICO schema for a clinical question. Read analyze_fulltext_access analyze_fulltext_access Read analyze_search_query analyze_search_query Read analyze_timeline_milestones analyze_timeline_milestones Read compare_timelines compare_timelines Read diagnose_institutional_access diagnose_institutional_access Read expand_search_queries expand_search_queries Read expand_search_terms Expand a search topic with MeSH terms and synonyms. Read fetch_article_details fetch_article_details Read find_citations Find articles that cite a given article. Read find_citing_articles find_citing_articles Read find_in_core find_in_core Read find_related Find articles related to a given article. Read find_related_articles find_related_articles Read get_article Get detailed information about a specific article by PMID. Read get_article_figures get_article_figures Read get_article_fulltext_links get_article_fulltext_links Read get_article_references get_article_references Read get_cached_article 從 session 快取取得文章詳情。 Read get_citation_metrics get_citation_metrics Read get_compound_details Get detailed information about a compound by PubChem CID. Read get_compound_literature Get PubMed articles linked to a compound. Read get_core_fulltext get_core_fulltext Read get_core_paper Get detailed information about a CORE paper. Read get_fulltext Get full text of an article from Europe PMC. Read get_gene_details Get detailed information about a gene by NCBI Gene ID. Read get_gene_literature get_gene_literature Read get_institutional_link get_institutional_link Read get_performance_metrics [DEV] Get MCP tool execution performance metrics. Read get_pipeline_history get_pipeline_history Read get_references Get the reference list of an article. Read get_session_log get_session_log Read get_session_pmids get_session_pmids Read get_session_summary get_session_summary Read get_text_mined_terms get_text_mined_terms Read list_pipelines list_pipelines Read list_resolver_presets list_resolver_presets Read load_pipeline load_pipeline Read read_session read_session Read search_biomedical_images search_biomedical_images Read search_clinvar search_clinvar Read search_compound Search PubChem for chemical compounds. Read search_core search_core Read search_core_fulltext search_core_fulltext Read search_gene Search NCBI Gene database. Read search_literature search_literature Read search_pubmed search_pubmed Read test_institutional_access test_institutional_access Read verify_reference_list verify_reference_list Read convert_icd_mesh convert_icd_mesh

WRITE 8 tools

Write configure_institutional_access configure_institutional_access Write export_citations Export citations in various formats. Write generate_search_queries generate_search_queries Write manage_pipeline manage_pipeline Write merge_search_results merge_search_results Write prepare_export prepare_export Write save_literature_notes save_literature_notes Write save_pipeline save_pipeline

DESTRUCTIVE 1 tools

Destructive delete_pipeline Delete a saved pipeline configuration and its execution history.

EXECUTE 1 tools

Execute schedule_pipeline schedule_pipeline

// FAQ

How many tools does the Pubmed Search MCP server have? +

The Pubmed Search MCP server exposes 63 tools across 4 categories: Read, Write, Destructive, Execute.

How do I enforce policies on Pubmed Search tools? +

Route the Pubmed Search server through the PolicyLayer gateway. Define allow, deny, or approval rules per tool in the dashboard; they are enforced on every call before it reaches the server.

What risk categories do Pubmed Search tools fall into? +

Pubmed Search tools are categorised as Read (53), Write (8), Destructive (1), Execute (1). Each category has a recommended default policy.

Enforce policy on every Pubmed Search tool call.

Start from Pubmed Search, add the rest of your stack, and see everything your agents can call. Then put policy on all of it.

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