FOR PROGRAMMATIC MCP CLIENTS ONLY (not for LLM agents). LLM agents: use get_upload_command + load_profile instead. Sends a chunk of genome data for a chunked upload session.
AI agents use upload_genome_chunk to create or update resources in Openpgx — usually the action step of a workflow, after the agent has gathered context. Every call changes real data in your Openpgx environment.
This tool creates or modifies genetic data in persistent storage through an upload mechanism. While not destructive (data can be overwritten), it is a Write operation that could allow an AI agent to inject, modify, or corrupt genomic records without user intent.
From the tool's definition Tool description states it 'Sends a chunk of genome data for a chunked upload session' — an explicit write/create operation that modifies stored genome data.
Documented attack patterns abuse exactly the kind of access upload_genome_chunk gives an agent:
PolicyLayer is an MCP gateway — it sits between your AI agents and Openpgx, and nothing reaches the server without passing your rules. This is the rule we recommend for upload_genome_chunk:
{
"version": "1",
"default": "deny",
"tools": {
"upload_genome_chunk": {
"limits": [
{
"counter": "upload_genome_chunk_rate",
"window": "minute",
"max": 30,
"scope": "grant"
}
]
}
}
}upload_genome_chunk stays usable, but capped — an agent stuck in a loop can't make hundreds of changes a minute. Everything else on the server is denied unless you say otherwise.
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FOR PROGRAMMATIC MCP CLIENTS ONLY (not for LLM agents). LLM agents: use get_upload_command + load_profile instead. Sends a chunk of genome data for a chunked upload session. It is categorised as a Write tool in the Openpgx MCP Server, which means it can create or modify data. Consider rate limits to prevent runaway writes.
Register the Openpgx MCP server in PolicyLayer and add a rule for upload_genome_chunk: allow, deny, rate-limit, or require approval. Point your MCP client at the PolicyLayer proxy URL and the rule is enforced on every call, before it reaches Openpgx. Nothing to install.
upload_genome_chunk is a Write tool with medium risk. Write tools should be rate-limited to prevent accidental bulk modifications.
Yes. Add a rate_limit block to the upload_genome_chunk rule in your PolicyLayer policy. For example, setting max: 10 and window: 60 limits the tool to 10 calls per minute. Rate limits are tracked per agent session and reset automatically.
Set action: deny in the PolicyLayer policy for upload_genome_chunk. The AI agent will receive a policy violation error and cannot call the tool. You can also include a reason field to explain why the tool is blocked.
upload_genome_chunk is provided by the Openpgx MCP server (open-pgx/openpgx). PolicyLayer sits as a proxy in front of this server to enforce policies before tool calls reach the server.
Start from Openpgx, add the rest of your stack, and see everything your agents can call. Then put policy on all of it.
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15 Openpgx tools catalogued and risk-classified — across an index of 43,000+ MCP servers.