Generate the most comprehensive genomic report available. Runs ALL modules at once: pharmacogenomics (all genes + clinical context), disease risk assessment (all 19 conditions with study citations and PMIDs), and genetic traits (all 30+ traits with studies). Includes odds ratios, evidence levels,...
AI agents call diagnostic_all to retrieve information from Openpgx without modifying anything — typically the context-gathering step in research, monitoring, and reporting workflows, before the agent takes action elsewhere.
This tool retrieves and analyzes existing genomic data to generate reports. It performs read-only operations (querying structured data, running analyses on existing datasets, compiling bibliographies and study citations). While it processes comprehensive health information which could have serious implications if misused, the tool itself performs no write, destructive, execute, or financial operations.
From the tool's definition Tool description states it 'Generate[s] the most comprehensive genomic report available' and 'Runs ALL modules at once' to compile and retrieve genetic analysis data.
Risk signalsBulk/mass operation — affects multiple targets
Documented attack patterns abuse exactly the kind of access diagnostic_all gives an agent:
PolicyLayer is an MCP gateway — it sits between your AI agents and Openpgx, and nothing reaches the server without passing your rules. This is the rule we recommend for diagnostic_all:
{
"version": "1",
"default": "deny",
"tools": {
"diagnostic_all": {}
}
}diagnostic_all is read-only, so it stays allowed — but everything else on the server is denied unless you say otherwise.
Free to start. No card required.
Generate the most comprehensive genomic report available. Runs ALL modules at once: pharmacogenomics (all genes + clinical context), disease risk assessment (all 19 conditions with study citations and PMIDs), and genetic traits (all 30+ traits with studies). Includes odds ratios, evidence levels, risk allele counts, and full bibliography. This is the. It is categorised as a Read tool in the Openpgx MCP Server, which means it retrieves data without modifying state.
Register the Openpgx MCP server in PolicyLayer and add a rule for diagnostic_all: allow, deny, rate-limit, or require approval. Point your MCP client at the PolicyLayer proxy URL and the rule is enforced on every call, before it reaches Openpgx. Nothing to install.
diagnostic_all is a Read tool with low risk. Read-only tools are generally safe to allow by default.
Yes. Add a rate_limit block to the diagnostic_all rule in your PolicyLayer policy. For example, setting max: 10 and window: 60 limits the tool to 10 calls per minute. Rate limits are tracked per agent session and reset automatically.
Set action: deny in the PolicyLayer policy for diagnostic_all. The AI agent will receive a policy violation error and cannot call the tool. You can also include a reason field to explain why the tool is blocked.
diagnostic_all is provided by the Openpgx MCP server (open-pgx/openpgx). PolicyLayer sits as a proxy in front of this server to enforce policies before tool calls reach the server.
Start from Openpgx, add the rest of your stack, and see everything your agents can call. Then put policy on all of it.
Free to start. No card required.
15 Openpgx tools catalogued and risk-classified — across an index of 43,000+ MCP servers.