PYPI:UNIPROT TOOLS

41 tools from the Pypi:uniprot MCP Server, categorised by risk level.

// ALL 41 PYPI:UNIPROT TOOLS

READ 35 tools

Read uniprot_batch_entries Fetch multiple entries. accessions=comma-separated UniProt IDs (first 100 fetched). Read uniprot_compute_properties uniprot_compute_properties Read uniprot_features_at_position uniprot_features_at_position Read uniprot_get_active_sites uniprot_get_active_sites Read uniprot_get_alphafold_confidence uniprot_get_alphafold_confidence Read uniprot_get_citation Fetch a UniProt citation record by ID (typically a PubMed ID, e.g. 9840937). Read uniprot_get_cross_refs Get cross-references to PDB, Pfam, ENSEMBL, Reactome, KEGG, STRING, etc. Optional database filter. Read uniprot_get_disease_associations uniprot_get_disease_associations Read uniprot_get_entry Fetch a UniProt protein entry by accession (e.g. P04637 for p53, P38398 for BRCA1). Read uniprot_get_evidence_summary uniprot_get_evidence_summary Read uniprot_get_features Get protein features: domains, binding sites, PTMs, signal peptides. Read uniprot_get_go_terms Get GO annotations grouped by aspect. Optional filter: 'F' (function), 'P' (process), 'C' (component). Read uniprot_get_keyword Fetch a UniProt keyword by ID (e.g. KW-0007 for Acetylation, KW-0539 for Nucleus). Read uniprot_get_processing_features uniprot_get_processing_features Read uniprot_get_proteome Fetch a UniProt proteome by UP ID (e.g. UP000005640 = human reference). Read uniprot_get_ptms uniprot_get_ptms Read uniprot_get_publications uniprot_get_publications Read uniprot_get_sequence Get protein sequence in FASTA format for a UniProt accession. Read uniprot_get_subcellular_location Fetch a UniProt subcellular-location term by ID (e.g. SL-0039 Cell membrane, SL-0086 Cytoplasm, SL-0191 Nuc... Read uniprot_get_uniparc uniprot_get_uniparc Read uniprot_get_uniref Fetch a UniRef cluster by ID. Examples: Read uniprot_get_variants Get known natural variants and disease mutations for a protein. Read uniprot_id_mapping Map between ID types. ids=comma-separated. Common db codes: UniProtKB_AC-ID, PDB, Ensembl, GeneID, Gene_Name. Read uniprot_lookup_variant uniprot_lookup_variant Read uniprot_provenance_verify uniprot_provenance_verify Read uniprot_replay_from_cache uniprot_replay_from_cache Read uniprot_search Search UniProtKB. Examples: '(gene:TP53) AND (organism_id:9606)', 'kinase AND reviewed:true'. Read uniprot_search_citations Search the UniProt citations index. Examples: 'p53 AND author:Vogelstein', Read uniprot_search_keywords Search UniProt's controlled keyword vocabulary by name or definition. Read uniprot_search_proteomes Search UniProt proteomes. Examples: 'organism_id:9606' for human, Read uniprot_search_subcellular_locations Search UniProt's controlled subcellular-location vocabulary. Read uniprot_search_uniparc Search UniParc. Examples: 'taxonomy_id:9606' for human sequences, Read uniprot_search_uniref Search UniRef clusters. ``identity_tier`` filters by % identity: Read uniprot_target_dossier uniprot_target_dossier Read uniprot_taxonomy_search Search UniProt taxonomy by organism name. Returns taxonomy IDs.

WRITE 6 tools

Write uniprot_resolve_alphafold Resolve the AlphaFoldDB cross-reference for a UniProt entry — typically Write uniprot_resolve_chembl Resolve ChEMBL drug-target cross-references for a UniProt entry. Write uniprot_resolve_clinvar uniprot_resolve_clinvar Write uniprot_resolve_interpro List InterPro signatures (domain / family classifications) for a Write uniprot_resolve_orthology uniprot_resolve_orthology Write uniprot_resolve_pdb List every PDB structure cross-referenced from a UniProt entry, with

// RUNNING THIS SERVER

The managed route: connect Pypi:uniprot through the PolicyLayer gateway — every tool call above is checked against your policy before it runs, with a full audit log.

DIRECT INSTALL (UNMANAGED) npx -y pypi:uniprot-mcp-server

// FAQ

How many tools does the Pypi:uniprot MCP server have? +

The Pypi:uniprot MCP server exposes 41 tools across 2 categories: Read, Write.

How do I enforce policies on Pypi:uniprot tools? +

Route the Pypi:uniprot server through the PolicyLayer gateway. Define allow, deny, or approval rules per tool in the dashboard; they are enforced on every call before it reaches the server.

What risk categories do Pypi:uniprot tools fall into? +

Pypi:uniprot tools are categorised as Read (35), Write (6). Each category has a recommended default policy.

Enforce policy on every Pypi:uniprot tool call.

Start from Pypi:uniprot, add the rest of your stack, and see everything your agents can call. Then put policy on all of it.

CHECK YOUR STACK →

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