get_molecule

A read tool on the Origene MCP server.

SERVEROrigeneMCP SOURCEgentel-lab/origenemcp

Low RISK CLASS

Category Read

Parameters 00 required

Recommended Allowedsee the rule below

Registry record Grade C, identity unverified Pull the record →

This record as markdown: /tools/gentel-lab-origenemcp/get-molecule.md

WHAT IT DOES

What get_molecule does on OrigeneMCP

AI agents call get_molecule to retrieve information from OrigeneMCP without modifying anything. It is typically the context-gathering step in research, monitoring, and reporting workflows, before the agent takes action elsewhere.

RISK

Why get_molecule is rated Low

The tool appears designed to fetch or retrieve molecular information from biomedical databases, consistent with the server's stated purpose of 'comprehensive information retrieval across molecules, proteins, genes, and diseases.' No modification, deletion, code execution, or financial operations are implied. The 'get_' prefix is a standard naming convention for read operations.

From the tool's definition Tool name 'get_molecule' suggests retrieval of molecular data. The empty description prevents full certainty, but the naming convention and context among sibling tools (which are all retrieval/query operations on biomedical databases like ClinVar and DepMap)…

Attacks that exploit this kind of access

RECOMMENDED RULE

The rule that runs get_molecule safely

PolicyLayer is an MCP gateway: it sits between your AI agents and OrigeneMCP, and checks every tool call against a rule you set before the call runs. Nothing changes on the server itself. For get_molecule, this is the rule to start with:

get_molecule Allowed

get_molecule is read-only, so it stays allowed. Everything else on the server is denied unless you say otherwise.

View as policy code

policy.json

{
  "version": "1",
  "default": "deny",
  "tools": {
    "get_molecule": {}
  }
}

ALLOW ONLY THIS TOOL → Instant setup, no code required.

The button opens the PolicyLayer dashboard: create your workspace, connect OrigeneMCP, apply this rule, and every get_molecule call is checked against it from then on.

FAQ

Questions about get_molecule

What does the get_molecule tool do? +

get_molecule is a read tool on the Origene MCP server. It is categorised as a Read tool in the OrigeneMCP MCP Server, which means it retrieves data without modifying state.

How do I enforce a policy on get_molecule? +

Register the Origene MCP server in PolicyLayer and add a rule for get_molecule: allow, deny, rate-limit, or require approval. Point your MCP client at the PolicyLayer proxy URL and the rule is enforced on every call, before it reaches OrigeneMCP. Nothing to install.

What risk level is get_molecule? +

get_molecule is a Read tool with low risk. Read-only tools are generally safe to allow by default.

Can I rate-limit get_molecule? +

Yes. Add a rate_limit block to the get_molecule rule in your PolicyLayer policy. For example, setting max: 10 and window: 60 limits the tool to 10 calls per minute. Rate limits are tracked per agent session and reset automatically.

How do I block get_molecule completely? +

Set action: deny in the PolicyLayer policy for get_molecule. The AI agent will receive a policy violation error and cannot call the tool. You can also include a reason field to explain why the tool is blocked.

What MCP server provides get_molecule? +

get_molecule is provided by the Origene MCP server (gentel-lab/origenemcp). PolicyLayer sits as a proxy in front of this server to enforce policies before tool calls reach the server.

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