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get_similarity_smiles

A read tool on the Origene MCP server.

SERVEROrigeneMCP SOURCEgentel-lab/origenemcp
Low RISK CLASS
Category Read
Parameters 00 required
Recommended Allowedsee the rule below
Registry record Grade C, identity unverified Pull the record →

This record as markdown: /tools/gentel-lab-origenemcp/get-similarity-smiles.md

What get_similarity_smiles does on OrigeneMCP

AI agents call get_similarity_smiles to retrieve information from OrigeneMCP without modifying anything. It is typically the context-gathering step in research, monitoring, and reporting workflows, before the agent takes action elsewhere.

Why get_similarity_smiles is rated Low

Based on the naming convention and context of sibling tools in OrigeneMCP (which performs data retrieval across biomedical databases), this tool likely queries chemical similarity metrics using SMILES strings without modifying data. The lack of destructive, financial, or execute semantics in the name, combined with the 'get_' accessor pattern, strongly suggests a read-only information retrieval function.

From the tool's definition Tool name 'get_similarity_smiles' indicates retrieval of similarity data for SMILES (chemical notation); the 'get_' prefix and absence of mutation/write operations in name suggest query-only behavior. Description is empty, limiting evidence precision.

Questions about get_similarity_smiles

What does the get_similarity_smiles tool do? +

get_similarity_smiles is a read tool on the Origene MCP server. It is categorised as a Read tool in the OrigeneMCP MCP Server, which means it retrieves data without modifying state.

How do I enforce a policy on get_similarity_smiles? +

Register the Origene MCP server in PolicyLayer and add a rule for get_similarity_smiles: allow, deny, rate-limit, or require approval. Point your MCP client at the PolicyLayer proxy URL and the rule is enforced on every call, before it reaches OrigeneMCP. Nothing to install.

What risk level is get_similarity_smiles? +

get_similarity_smiles is a Read tool with low risk. Read-only tools are generally safe to allow by default.

Can I rate-limit get_similarity_smiles? +

Yes. Add a rate_limit block to the get_similarity_smiles rule in your PolicyLayer policy. For example, setting max: 10 and window: 60 limits the tool to 10 calls per minute. Rate limits are tracked per agent session and reset automatically.

How do I block get_similarity_smiles completely? +

Set action: deny in the PolicyLayer policy for get_similarity_smiles. The AI agent will receive a policy violation error and cannot call the tool. You can also include a reason field to explain why the tool is blocked.

What MCP server provides get_similarity_smiles? +

get_similarity_smiles is provided by the Origene MCP server (gentel-lab/origenemcp). PolicyLayer sits as a proxy in front of this server to enforce policies before tool calls reach the server.

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