pdb_get_uniprot_annotations
A read tool on the Origene MCP server.
This record as markdown: /tools/gentel-lab-origenemcp/pdb-get-uniprot-annotations.md
What pdb_get_uniprot_annotations does on OrigeneMCP
AI agents call pdb_get_uniprot_annotations to retrieve information from OrigeneMCP without modifying anything. It is typically the context-gathering step in research, monitoring, and reporting workflows, before the agent takes action elsewhere.
Why pdb_get_uniprot_annotations is rated Low
This is a data retrieval tool that queries biological databases (PDB/UniProt) to fetch pre-existing annotation data. The 'get' prefix strongly indicates a read-only operation with no side effects. The empty description lowers confidence slightly, but the name itself is sufficiently informative for classification. Risk is low because misuse would only retrieve data, with no capability to modify or delete information.
From the tool's definition Tool name 'pdb_get_uniprot_annotations' indicates data retrieval: 'get' denotes a query operation that fetches UniProt annotations from the PDB database. No modification, deletion, or execution semantics are present.
Attacks that exploit this kind of access
The rule that runs pdb_get_uniprot_annotations safely
PolicyLayer is an MCP gateway: it sits between your AI agents and OrigeneMCP, and checks every tool call against a rule you set before the call runs. Nothing changes on the server itself. For pdb_get_uniprot_annotations, this is the rule to start with:
pdb_get_uniprot_annotations is read-only, so it stays allowed. Everything else on the server is denied unless you say otherwise.
The button opens the PolicyLayer dashboard: create your workspace, connect OrigeneMCP, apply this rule, and every pdb_get_uniprot_annotations call is checked against it from then on.
Questions about pdb_get_uniprot_annotations
pdb_get_uniprot_annotations is a read tool on the Origene MCP server. It is categorised as a Read tool in the OrigeneMCP MCP Server, which means it retrieves data without modifying state.
Register the Origene MCP server in PolicyLayer and add a rule for pdb_get_uniprot_annotations: allow, deny, rate-limit, or require approval. Point your MCP client at the PolicyLayer proxy URL and the rule is enforced on every call, before it reaches OrigeneMCP. Nothing to install.
pdb_get_uniprot_annotations is a Read tool with low risk. Read-only tools are generally safe to allow by default.
Yes. Add a rate_limit block to the pdb_get_uniprot_annotations rule in your PolicyLayer policy. For example, setting max: 10 and window: 60 limits the tool to 10 calls per minute. Rate limits are tracked per agent session and reset automatically.
Set action: deny in the PolicyLayer policy for pdb_get_uniprot_annotations. The AI agent will receive a policy violation error and cannot call the tool. You can also include a reason field to explain why the tool is blocked.
pdb_get_uniprot_annotations is provided by the Origene MCP server (gentel-lab/origenemcp). PolicyLayer sits as a proxy in front of this server to enforce policies before tool calls reach the server.
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